JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPINK2_chr4_56804861_56826701	0/0	t0004	318	1	0	0	1	0	0	copy fasta	SPINK2	chr4	56804861	56826701
SPINK2_chr4_56804861_56826701	0/0	t0005	318	1	0	0	1	0	0	copy fasta	SPINK2	chr4	56804861	56826701
SPINK4_chr9_33235167_33253567	1/1	t0001	139	217	20	49	115	7	24	copy fasta	SPINK4	chr9	33235167	33253567
SPINK4_chr9_33235167_33253567	0/0	t0002	139	161	66	25	61	1	8	copy fasta	SPINK4	chr9	33235167	33253567
SPINK5_chr5_148058980_148142382	1/0	t0001	457	148	19	21	81	8	18	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/1	t0002	460	144	49	19	64	7	4	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	t0003	460	70	5	7	45	1	12	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	t0004	460	6	6	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	t0005	457	5	5	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	t0006	457	4	4	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	t0007	457	3	3	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	t0008	460	2	2	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	t0009	457	1	1	0	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK5_chr5_148058980_148142382	0/0	t0010	457	1	0	1	0	0	0	copy fasta	SPINK5	chr5	148058980	148142382
SPINK6_chr5_148198042_148220137	1/1	t0001	243	432	96	72	212	12	38	copy fasta	SPINK6	chr5	148198042	148220137
SPINK6_chr5_148198042_148220137	0/0	t0002	243	5	4	1	0	0	0	copy fasta	SPINK6	chr5	148198042	148220137
SPINK6_chr5_148198042_148220137	0/0	t0003	243	1	0	1	0	0	0	copy fasta	SPINK6	chr5	148198042	148220137
SPINK7_chr5_148307423_148320919	1/1	t0001	297	288	39	55	146	14	32	copy fasta	SPINK7	chr5	148307423	148320919
SPINK7_chr5_148307423_148320919	0/0	t0002	300	143	49	17	61	0	16	copy fasta	SPINK7	chr5	148307423	148320919
SPINK7_chr5_148307423_148320919	0/0	t0003	299	9	0	0	9	0	0	copy fasta	SPINK7	chr5	148307423	148320919
SPINK7_chr5_148307423_148320919	0/0	t0004	300	3	3	0	0	0	0	copy fasta	SPINK7	chr5	148307423	148320919
SPINK7_chr5_148307423_148320919	0/0	t0005	295	3	3	0	0	0	0	copy fasta	SPINK7	chr5	148307423	148320919
SPINK7_chr5_148307423_148320919	0/0	t0006	300	1	1	0	0	0	0	copy fasta	SPINK7	chr5	148307423	148320919
SPINK7_chr5_148307423_148320919	0/0	t0007	300	1	1	0	0	0	0	copy fasta	SPINK7	chr5	148307423	148320919
SPINK8_chr3_48301842_48338661	1/1	t0001	519	258	65	54	106	8	23	copy fasta	SPINK8	chr3	48301842	48338661
SPINK8_chr3_48301842_48338661	0/0	t0002	519	2	0	0	2	0	0	copy fasta	SPINK8	chr3	48301842	48338661
SPINK8_chr3_48301842_48338661	0/0	t0003	519	1	0	0	0	0	1	copy fasta	SPINK8	chr3	48301842	48338661
SPINK8_chr3_48301842_48338661	0/0	t0004	519	1	1	0	0	0	0	copy fasta	SPINK8	chr3	48301842	48338661
SPINK9_chr5_148330559_148344852	1/1	t0001	196	430	92	72	212	10	42	copy fasta	SPINK9	chr5	148330559	148344852
SPINT1_chr15_40839048_40863207	0/1	t0001	1437	104	10	33	40	2	18	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0002	1438	61	1	9	39	5	7	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0003	1440	45	5	8	24	2	6	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0004	1438	41	37	3	1	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	1/0	t0005	1437	26	10	6	0	5	4	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0006	1448	15	0	1	14	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0007	1448	12	7	0	5	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0008	1440	11	0	0	11	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0009	1441	6	6	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0010	1440	4	0	0	4	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0011	1439	3	3	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0012	1439	3	3	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0013	1437	3	0	0	1	0	2	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0014	1441	2	0	0	2	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0015	1436	2	2	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0016	1437	2	2	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0017	1438	2	2	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0018	1439	2	1	0	1	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0019	1437	1	0	0	0	1	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0020	1437	1	1	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0021	1437	1	1	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207