JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPINT1_chr15_40839048_40863207	0/0	t0022	1436	1	1	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0023	1435	1	1	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0024	1440	1	1	0	0	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0025	1438	1	0	0	1	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0026	1439	1	0	0	1	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0027	1437	1	0	0	0	1	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0028	1437	1	0	0	0	0	1	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0029	1440	1	0	0	1	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0030	1441	1	0	0	1	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0031	1450	1	0	0	1	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT1_chr15_40839048_40863207	0/0	t0032	1449	1	0	0	1	0	0	copy fasta	SPINT1	chr15	40839048	40863207
SPINT2_chr19_38259573_38297615	1/1	t0001	930	282	68	41	125	13	33	copy fasta	SPINT2	chr19	38259573	38297615
SPINT2_chr19_38259573_38297615	0/0	t0002	930	110	18	30	55	3	4	copy fasta	SPINT2	chr19	38259573	38297615
SPINT2_chr19_38259573_38297615	0/0	t0003	930	3	0	0	0	0	3	copy fasta	SPINT2	chr19	38259573	38297615
SPINT2_chr19_38259573_38297615	0/0	t0004	930	1	0	0	1	0	0	copy fasta	SPINT2	chr19	38259573	38297615
SPINT2_chr19_38259573_38297615	0/0	t0005	930	1	0	0	1	0	0	copy fasta	SPINT2	chr19	38259573	38297615
SPINT2_chr19_38259573_38297615	0/0	t0006	930	1	0	0	1	0	0	copy fasta	SPINT2	chr19	38259573	38297615
SPINT2_chr19_38259573_38297615	0/0	t0007	930	1	0	0	1	0	0	copy fasta	SPINT2	chr19	38259573	38297615
SPINT2_chr19_38259573_38297615	0/0	t0008	930	1	0	1	0	0	0	copy fasta	SPINT2	chr19	38259573	38297615
SPINT3_chr20_45507461_45520622	0/1	t0001	199	199	48	41	76	9	24	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	1/0	t0002	205	126	23	16	69	4	13	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/0	t0003	203	119	17	28	62	5	7	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/0	t0004	203	4	4	0	0	0	0	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/0	t0005	203	3	2	1	0	0	0	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/0	t0006	205	1	0	0	0	0	1	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/0	t0007	199	1	0	0	1	0	0	copy fasta	SPINT3	chr20	45507461	45520622
SPINT3_chr20_45507461_45520622	0/0	t0008	203	1	0	0	0	0	1	copy fasta	SPINT3	chr20	45507461	45520622
SPINT4_chr20_45717347_45730830	0/0	t0001	217	211	57	21	110	4	19	copy fasta	SPINT4	chr20	45717347	45730830
SPINT4_chr20_45717347_45730830	1/1	t0002	217	119	7	33	50	10	17	copy fasta	SPINT4	chr20	45717347	45730830
SPINT4_chr20_45717347_45730830	0/0	t0003	217	110	21	17	65	0	7	copy fasta	SPINT4	chr20	45717347	45730830
SPINT4_chr20_45717347_45730830	0/0	t0004	217	16	11	3	0	0	2	copy fasta	SPINT4	chr20	45717347	45730830
SPINT4_chr20_45717347_45730830	0/0	t0005	217	1	0	0	1	0	0	copy fasta	SPINT4	chr20	45717347	45730830
SPINT4_chr20_45717347_45730830	0/0	t0006	217	1	0	0	0	0	1	copy fasta	SPINT4	chr20	45717347	45730830
SPIRE1_chr18_12441512_12663107	0/1	t0001	3368	133	28	19	65	2	18	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	1/0	t0002	3368	64	10	20	24	1	8	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0003	3368	50	14	9	25	0	2	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0004	3368	15	11	3	0	1	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0005	3368	8	7	1	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0006	3369	7	0	3	0	2	2	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0007	3369	5	1	4	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0008	3368	5	0	1	0	0	4	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0009	3368	4	4	0	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0010	3368	4	1	1	1	1	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0011	3368	4	0	0	4	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0012	3369	2	0	2	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0013	3368	2	0	1	0	1	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0014	3369	2	0	0	0	2	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0015	3368	2	2	0	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0016	3368	2	2	0	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0017	3368	2	2	0	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107