JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPIRE1_chr18_12441512_12663107	0/0	t0018	3368	1	0	1	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0019	3368	1	0	0	0	0	1	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0020	3368	1	0	0	1	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0021	3368	1	0	1	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0022	3368	1	1	0	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0023	3367	1	1	0	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0024	3368	1	0	1	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0025	3368	1	0	1	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0026	3368	1	0	0	1	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0027	3368	1	0	0	0	0	1	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0028	3368	1	1	0	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0029	3368	1	0	1	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0030	3368	1	1	0	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0031	3368	1	1	0	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0032	3368	1	0	1	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0033	3369	1	1	0	0	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE1_chr18_12441512_12663107	0/0	t0034	3368	1	0	0	1	0	0	copy fasta	SPIRE1	chr18	12441512	12663107
SPIRE2_chr16_89823475_89876319	1/0	t0001	1124	279	76	59	86	15	42	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	t0002	1119	32	0	1	28	1	2	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	t0003	1118	20	19	1	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	t0004	1124	11	0	6	5	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/1	t0005	1124	4	0	0	3	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	t0006	1124	1	0	0	0	0	1	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	t0007	1124	1	0	0	1	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	t0008	1124	1	1	0	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	t0009	1125	1	0	1	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	t0010	1124	1	0	1	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	t0011	1124	1	0	0	0	0	1	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	t0012	1124	1	0	1	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	t0013	1124	1	0	1	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	t0014	1119	1	0	0	1	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPIRE2_chr16_89823475_89876319	0/0	t0015	1124	1	0	1	0	0	0	copy fasta	SPIRE2	chr16	89823475	89876319
SPNS1_chr16_28969778_28989543	0/0	t0001	619	306	73	36	154	8	35	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	1/1	t0002	619	67	6	33	12	6	8	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	t0003	619	16	0	0	15	0	1	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	t0004	619	3	3	0	0	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	t0005	619	2	0	0	0	0	2	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	t0006	619	1	1	0	0	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	t0007	619	1	0	1	0	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	t0008	619	1	0	0	1	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS1_chr16_28969778_28989543	0/0	t0009	619	1	1	0	0	0	0	copy fasta	SPNS1	chr16	28969778	28989543
SPNS2_chr17_4493881_4544035	0/1	t0001	1751	136	10	38	68	5	14	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0002	1751	98	2	17	70	0	9	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	1/0	t0003	1755	40	6	19	1	5	8	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0004	1751	27	23	4	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0005	1751	10	2	2	1	0	5	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0006	1751	10	10	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0007	1751	6	5	1	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0008	1751	5	0	0	4	0	1	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0009	1755	5	4	0	0	1	0	copy fasta	SPNS2	chr17	4493881	4544035