JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPNS2_chr17_4493881_4544035	0/0	t0010	1751	5	0	3	0	1	1	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0011	1751	4	4	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0012	1751	4	0	0	4	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0013	1751	4	0	2	0	2	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0014	1755	4	1	1	0	0	2	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0015	1751	3	3	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0016	1755	3	2	0	0	0	1	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0017	1755	2	2	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0018	1740	2	0	0	2	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0019	1751	2	2	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0020	1751	2	0	0	2	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0021	1755	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0022	1751	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0023	1751	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0024	1751	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0025	1751	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0026	1755	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0027	1751	1	0	1	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0028	1751	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0029	1751	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0030	1751	1	0	0	0	0	1	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0031	1755	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0032	1751	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0033	1755	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0034	1751	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0035	1751	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0036	1751	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0037	1751	1	0	0	1	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0038	1751	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0039	1751	1	0	0	1	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0040	1751	1	0	0	1	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0041	1751	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0042	1751	1	0	0	1	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0043	1751	1	0	0	1	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0044	1751	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0045	1755	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0046	1751	1	0	0	0	0	1	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0047	1751	1	0	0	1	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0048	1751	1	0	0	0	0	1	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0049	1751	1	0	0	0	0	1	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0050	1751	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0051	1751	1	1	0	0	0	0	copy fasta	SPNS2	chr17	4493881	4544035
SPNS2_chr17_4493881_4544035	0/0	t0052	1751	1	0	0	0	0	1	copy fasta	SPNS2	chr17	4493881	4544035
SPNS3_chr17_4428940_4493204	1/1	t0001	339	233	43	31	125	3	29	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	t0002	339	79	45	19	7	2	6	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	t0003	339	48	8	18	4	9	9	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	t0004	339	1	1	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPNS3_chr17_4428940_4493204	0/0	t0005	339	1	1	0	0	0	0	copy fasta	SPNS3	chr17	4428940	4493204
SPN_chr16_29658247_29675876	0/0	t0001	6070	27	1	6	19	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0002	6054	19	1	2	13	0	3	copy fasta	SPN	chr16	29658247	29675876