JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPN_chr16_29658247_29675876	0/0	t0003	6046	14	2	5	1	2	4	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0004	6072	13	5	3	3	1	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0005	6072	13	2	6	4	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0006	6058	12	2	7	2	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0007	6056	11	0	3	4	1	3	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0008	6072	10	0	2	5	0	3	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0009	6070	8	0	3	3	0	2	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0010	6074	8	0	1	7	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0011	6056	8	0	0	7	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0012	6046	7	6	0	0	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0013	6048	6	0	4	1	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0014	6059	6	6	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0015	6074	5	0	0	4	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0016	6076	5	0	2	3	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0017	6052	5	0	4	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0018	6066	4	0	1	3	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0019	6074	4	0	1	3	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0020	6042	4	4	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0021	6074	4	0	0	4	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0022	6056	4	0	0	4	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0023	6054	4	0	0	4	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0024	6066	3	0	1	0	0	2	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0025	6064	3	0	2	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0026	6051	3	3	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0027	6072	3	0	0	3	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0028	6058	3	3	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0029	6060	3	0	0	1	0	2	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0030	6050	3	3	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0031	6056	3	0	3	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0032	6048	3	2	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0033	6054	3	0	2	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0034	6056	2	0	0	0	2	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0035	6065	2	0	0	2	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0036	6076	2	0	0	2	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0037	6074	2	1	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0038	6074	2	0	0	2	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0039	6070	2	2	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0040	6067	2	0	0	2	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0041	6038	2	2	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0042	6076	2	0	0	2	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0043	6072	2	0	0	2	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0044	6074	2	0	0	2	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0045	6070	2	0	2	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0046	6066	2	0	0	2	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0047	6066	2	0	1	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0048	6060	2	0	0	1	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0049	6058	2	0	2	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0050	6054	2	2	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0051	6047	2	2	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0052	6048	2	1	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876