Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BIRC3_chr11_102312484_102344403	0/0	t0017	5064	2	0	1	0	0	1	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0018	5061	2	0	1	1	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0019	5062	2	0	1	1	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0020	5060	2	0	1	0	1	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0021	5063	2	2	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0022	5062	1	1	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0023	5062	1	0	0	1	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0024	5063	1	1	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0025	5061	1	0	1	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0026	5061	1	1	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0027	5059	1	1	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0028	5064	1	0	1	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0029	5065	1	0	0	0	0	1	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0030	5064	1	0	0	0	0	1	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0031	5062	1	1	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0032	5063	1	0	0	1	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0033	5062	1	1	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0034	5062	1	0	0	0	0	1	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0035	5062	1	0	0	0	0	1	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0036	5061	1	1	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0037	5062	1	1	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0038	5062	1	1	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0039	5062	1	1	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0040	5060	1	1	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0041	5062	1	1	0	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC3_chr11_102312484_102344403	0/0	t0042	5062	1	0	1	0	0	0	copy fasta	BIRC3	chr11	102312484	102344403
BIRC5_chr17_78209253_78230635	0/1	t0001	2146	141	27	29	71	5	8	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0002	2141	87	28	17	32	2	8	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0003	2146	75	11	12	40	5	7	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0004	2141	25	1	0	23	0	1	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0005	2143	15	0	5	0	3	7	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0006	2142	12	2	3	3	0	4	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	1/0	t0007	2146	8	0	4	1	0	2	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0008	2146	5	0	3	1	1	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0009	2141	5	5	0	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0010	2146	4	2	1	1	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0011	2141	4	4	0	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0012	2146	3	0	0	0	0	3	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0013	2146	3	0	0	3	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0014	2146	3	3	0	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0015	2143	3	1	2	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0016	2146	3	3	0	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0017	2143	2	0	0	2	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0018	2141	2	0	0	2	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0019	2142	2	0	0	2	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0020	2141	2	0	2	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0021	2146	2	0	0	1	0	1	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0022	2141	2	0	2	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0023	2141	2	0	0	0	0	2	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0024	2146	2	2	0	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635