JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SPN_chr16_29658247_29675876	0/0	t0053	6052	2	0	0	1	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0054	6046	2	2	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0055	6050	2	0	0	2	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0056	6046	2	2	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0057	6044	2	2	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0058	6076	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0059	6072	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0060	6069	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0061	6066	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0062	6065	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0063	6065	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0064	6065	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0065	6076	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0066	6055	1	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0067	6073	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0068	6074	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0069	6076	1	0	0	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0070	6072	1	0	0	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0071	6077	1	0	0	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0072	6074	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0073	6073	1	0	0	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0074	6072	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0075	6071	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0076	6070	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0077	6071	1	0	0	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0078	6070	1	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0079	6070	1	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0080	6066	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0081	6066	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0082	6066	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0083	6058	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0084	6070	1	0	0	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0085	6066	1	0	0	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0086	6040	1	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0087	6038	1	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0088	6036	1	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0089	6038	1	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0090	6036	1	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0091	6065	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0092	6063	1	0	0	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0093	6078	1	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0094	6065	1	0	0	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0095	6076	1	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0096	6076	1	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0097	6065	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0098	6061	1	0	0	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0099	6059	1	0	0	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0100	6074	1	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0101	6061	1	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0102	6055	1	0	0	0	1	copy fasta	SPN	chr16	29658247	29675876