JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPN_chr16_29658247_29675876	0/0	t0103	6077	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0104	6075	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0105	6072	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0106	6073	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0107	6076	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0108	6072	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0109	6074	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0110	6072	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0111	6070	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0112	6067	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0113	6045	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0114	6043	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0115	6044	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0116	6045	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0117	6041	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0118	6043	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0119	6042	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0120	6061	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0121	6064	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0122	6062	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0123	6057	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0124	6076	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0125	6076	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0126	6072	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0127	6046	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0128	6050	1	0	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0129	6060	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0130	6064	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0131	6062	1	0	0	0	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0132	6056	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0133	6058	1	0	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0134	6062	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0135	6058	1	0	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0136	6060	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0137	6057	1	0	0	0	1	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0138	6056	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0139	6056	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0140	6054	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0141	6058	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0142	6056	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0143	6056	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0144	6055	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0145	6054	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0146	6058	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0147	6052	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0148	6050	1	0	0	0	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0149	6048	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0150	6058	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0151	6056	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0152	6054	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876