JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPN_chr16_29658247_29675876	0/0	t0153	6050	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0154	6096	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0155	6048	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0156	6049	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0157	6048	1	0	0	0	0	1	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/1	t0158	6048	1	0	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0159	6047	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0160	6049	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0161	6048	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	1/0	t0162	6050	1	0	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0163	6046	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0164	6061	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0165	6061	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0166	6044	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0167	6056	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0168	6073	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0169	6028	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0170	6070	1	0	0	1	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0171	6050	1	1	0	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPN_chr16_29658247_29675876	0/0	t0172	6072	1	0	1	0	0	0	copy fasta	SPN	chr16	29658247	29675876
SPO11_chr20_57324803_57348993	1/1	t0001	599	258	60	48	113	9	26	copy fasta	SPO11	chr20	57324803	57348993
SPO11_chr20_57324803_57348993	0/0	t0002	599	24	1	3	8	2	10	copy fasta	SPO11	chr20	57324803	57348993
SPO11_chr20_57324803_57348993	0/0	t0003	599	20	19	1	0	0	0	copy fasta	SPO11	chr20	57324803	57348993
SPO11_chr20_57324803_57348993	0/0	t0004	604	16	11	3	0	1	1	copy fasta	SPO11	chr20	57324803	57348993
SPO11_chr20_57324803_57348993	0/0	t0005	604	1	1	0	0	0	0	copy fasta	SPO11	chr20	57324803	57348993
SPO11_chr20_57324803_57348993	0/0	t0006	599	1	0	1	0	0	0	copy fasta	SPO11	chr20	57324803	57348993
SPO11_chr20_57324803_57348993	0/0	t0007	599	1	0	0	1	0	0	copy fasta	SPO11	chr20	57324803	57348993
SPO11_chr20_57324803_57348993	0/0	t0008	599	1	0	0	0	0	1	copy fasta	SPO11	chr20	57324803	57348993
SPOCD1_chr1_31785422_31821022	0/1	t0001	283	186	64	34	52	7	28	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	1/0	t0002	283	72	6	10	47	3	5	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	t0003	283	1	0	0	1	0	0	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCD1_chr1_31785422_31821022	0/0	t0004	283	1	0	0	0	0	1	copy fasta	SPOCD1	chr1	31785422	31821022
SPOCK1_chr5_136970298_137504326	0/0	t0001	3505	33	10	2	17	0	4	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0002	3506	25	8	1	14	1	1	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0003	3507	14	3	1	7	2	1	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0004	3502	10	4	2	1	2	1	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0005	3508	10	5	1	4	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0006	3507	6	6	0	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0007	3507	5	4	1	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0008	3506	5	1	1	3	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0009	3508	4	1	1	0	1	1	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0010	3507	4	3	0	0	1	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0011	3503	4	1	0	2	0	1	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0012	3507	4	0	0	3	0	1	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0013	3506	3	0	0	3	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0014	3508	2	1	1	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0015	3509	2	0	0	0	1	1	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0016	3508	2	0	0	1	0	1	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0017	3508	2	2	0	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0018	3507	1	1	0	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326