JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPOCK1_chr5_136970298_137504326	0/0	t0019	3507	1	1	0	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0020	3506	1	0	0	1	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0021	3507	1	0	0	1	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0022	3507	1	0	0	1	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0023	3507	1	1	0	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0024	3507	1	0	0	0	0	1	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0025	3507	1	1	0	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0026	3507	1	0	1	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0027	3506	1	0	0	1	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0028	3507	1	0	0	0	0	1	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0029	3507	1	1	0	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0030	3508	1	1	0	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0031	3508	1	0	0	1	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0032	3508	1	1	0	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0033	3508	1	1	0	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK1_chr5_136970298_137504326	0/0	t0034	3508	1	1	0	0	0	0	copy fasta	SPOCK1	chr5	136970298	137504326
SPOCK2_chr10_72054034_72093551	1/1	t0001	3950	92	2	19	56	3	10	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0002	3949	51	27	5	17	1	1	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0003	3949	37	4	16	10	1	6	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0004	3949	28	4	7	11	1	5	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0005	3950	24	1	7	6	2	8	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0006	3950	24	3	1	19	1	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0007	3949	18	1	2	5	0	10	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0008	3950	16	0	1	12	0	3	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0009	3949	7	7	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0010	3949	6	6	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0011	3949	5	0	0	5	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0012	3949	4	3	1	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0013	3950	4	0	3	0	0	1	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0014	3949	3	3	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0015	3942	3	3	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0016	3949	3	3	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0017	3943	3	0	0	3	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0018	3950	3	3	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0019	3949	2	2	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0020	3949	2	1	1	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0021	3942	2	0	0	2	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0022	3950	2	0	0	0	2	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0023	3950	2	0	0	2	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0024	3950	2	2	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0025	3950	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0026	3950	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0027	3949	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0028	3949	1	0	0	0	1	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0029	3949	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0030	3942	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0031	3949	1	0	1	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0032	3949	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0033	3949	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0034	3949	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551