JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPOCK2_chr10_72054034_72093551	0/0	t0035	3949	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0036	3949	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0037	3949	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0038	3949	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0039	3949	1	0	1	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0040	3949	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0041	3949	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0042	3949	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0043	3950	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0044	3950	1	0	1	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0045	3950	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0046	3950	1	0	1	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0047	3950	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0048	3950	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0049	3950	1	0	0	1	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0050	3950	1	0	1	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0051	3950	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0052	3950	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK2_chr10_72054034_72093551	0/0	t0053	3949	1	1	0	0	0	0	copy fasta	SPOCK2	chr10	72054034	72093551
SPOCK3_chr4_166728384_167239494	1/0	t0001	1583	57	12	14	22	1	7	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	t0002	1583	41	16	9	11	2	3	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	t0003	1583	30	22	6	1	0	1	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	t0004	1583	3	3	0	0	0	0	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	t0005	1583	2	2	0	0	0	0	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/1	t0006	1583	2	0	0	1	0	0	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	t0007	1583	2	0	2	0	0	0	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	t0008	1583	1	0	0	0	1	0	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	t0009	1583	1	0	0	0	1	0	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	t0010	1583	1	0	1	0	0	0	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	t0011	1583	1	0	0	0	0	1	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	t0012	1583	1	0	0	1	0	0	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	t0013	1583	1	0	0	0	1	0	copy fasta	SPOCK3	chr4	166728384	167239494
SPOCK3_chr4_166728384_167239494	0/0	t0014	1583	1	1	0	0	0	0	copy fasta	SPOCK3	chr4	166728384	167239494
SPON1_chr11_13957723_14273133	1/0	t0001	2629	122	43	20	39	4	15	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/1	t0002	2630	35	4	9	16	0	5	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	t0003	2629	27	13	6	4	2	2	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	t0004	2630	13	4	1	4	1	3	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	t0005	2630	5	0	2	3	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	t0006	2629	3	3	0	0	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	t0007	2630	3	0	0	2	0	1	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	t0008	2630	2	0	0	0	0	2	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	t0009	2629	2	2	0	0	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	t0010	2629	2	2	0	0	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	t0011	2629	1	0	0	1	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	t0012	2629	1	1	0	0	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	t0013	2629	1	0	0	1	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	t0014	2629	1	1	0	0	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	t0015	2630	1	1	0	0	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	t0016	2629	1	0	0	0	1	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	t0017	2629	1	0	0	1	0	0	copy fasta	SPON1	chr11	13957723	14273133