JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPON1_chr11_13957723_14273133	0/0	t0018	2629	1	1	0	0	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	t0019	2629	1	1	0	0	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON1_chr11_13957723_14273133	0/0	t0020	2630	1	0	0	1	0	0	copy fasta	SPON1	chr11	13957723	14273133
SPON2_chr4_1161932_1177583	1/1	t0001	584	386	86	80	168	11	39	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	t0002	584	36	0	2	31	1	2	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	t0003	584	4	0	0	0	0	4	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	t0004	584	2	2	0	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	t0005	584	1	1	0	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	t0006	584	1	0	0	1	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	t0007	584	1	1	0	0	0	0	copy fasta	SPON2	chr4	1161932	1177583
SPON2_chr4_1161932_1177583	0/0	t0008	584	1	0	0	0	0	1	copy fasta	SPON2	chr4	1161932	1177583
SPOPL_chr2_138496770_138578547	0/0	t0001	4878	117	14	24	60	4	15	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/1	t0002	4878	77	0	17	56	1	2	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0003	4878	60	8	2	49	0	1	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0004	4878	31	19	5	0	2	5	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0005	4878	27	18	4	0	3	2	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	1/0	t0006	4878	8	3	0	2	0	2	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0007	4878	6	0	0	6	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0008	4878	3	0	1	0	2	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0009	4878	3	3	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0010	4874	3	0	0	3	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0011	4866	2	2	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0012	4878	2	2	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0013	4878	2	1	0	0	0	1	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0014	4878	2	0	0	0	0	2	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0015	4878	2	2	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0016	4878	2	1	1	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0017	4878	1	1	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0018	4866	1	1	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0019	4878	1	1	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0020	4878	1	0	0	1	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0021	4878	1	0	0	1	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0022	4866	1	0	0	1	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0023	4878	1	1	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0024	4878	1	0	0	1	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0025	4878	1	1	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0026	4878	1	1	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0027	4878	1	1	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0028	4878	1	1	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0029	4867	1	0	0	0	0	1	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0030	4878	1	1	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0031	4878	1	1	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0032	4878	1	0	0	0	0	1	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0033	4878	1	0	1	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0034	4878	1	0	1	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0035	4878	1	0	0	1	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0036	4878	1	0	0	0	0	1	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0037	4878	1	0	0	1	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0038	4878	1	1	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0039	4878	1	1	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547