JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPOPL_chr2_138496770_138578547	0/0	t0040	4878	1	0	0	0	0	1	copy fasta	SPOPL	chr2	138496770	138578547
SPOPL_chr2_138496770_138578547	0/0	t0041	4878	1	1	0	0	0	0	copy fasta	SPOPL	chr2	138496770	138578547
SPOP_chr17_49593884_49683097	1/0	t0001	1726	87	13	23	35	1	14	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0002	1725	58	9	11	30	2	6	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0003	1727	42	14	17	3	2	6	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0004	1728	34	4	1	28	0	1	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0005	1728	34	1	5	25	0	3	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/1	t0006	1725	33	0	7	15	2	8	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0007	1726	20	0	1	17	0	2	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0008	1726	19	14	1	4	0	0	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0009	1726	11	9	2	0	0	0	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0010	1725	8	6	1	1	0	0	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0011	1727	7	6	0	1	0	0	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0012	1727	6	4	1	0	1	0	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0013	1725	6	0	4	0	1	1	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0014	1728	4	3	1	0	0	0	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0015	1727	3	2	1	0	0	0	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0016	1726	3	3	0	0	0	0	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0017	1727	3	1	0	0	1	1	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0018	1725	2	1	1	0	0	0	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0019	1726	2	2	0	0	0	0	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0020	1728	2	0	0	2	0	0	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0021	1727	1	1	0	0	0	0	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0022	1727	1	0	1	0	0	0	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0023	1727	1	1	0	0	0	0	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0024	1725	1	0	0	1	0	0	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0025	1726	1	0	1	0	0	0	copy fasta	SPOP	chr17	49593884	49683097
SPOP_chr17_49593884_49683097	0/0	t0026	1726	1	0	1	0	0	0	copy fasta	SPOP	chr17	49593884	49683097
SPOUT1_chr9_128814651_128834794	0/0	t0001	3129	145	6	46	67	10	16	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0002	3129	110	45	20	28	1	16	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/1	t0003	3129	38	1	1	31	1	3	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0004	3129	30	9	2	14	1	4	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0005	3129	9	8	1	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0006	3129	9	0	0	9	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0007	3129	8	0	0	6	0	2	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0008	3129	7	0	0	7	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0009	3129	5	0	0	5	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0010	3129	4	0	0	4	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0011	3129	4	0	0	4	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0012	3129	3	0	2	0	0	1	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0013	3129	2	2	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0014	3129	2	2	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0015	3129	2	0	0	2	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0016	3051	2	0	0	2	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0017	3129	2	2	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	1/0	t0018	3129	2	1	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0019	3129	2	2	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0020	3129	1	1	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0021	3129	1	1	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0022	3129	1	1	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794