JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPOUT1_chr9_128814651_128834794	0/0	t0023	3129	1	0	1	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0024	3129	1	0	1	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0025	3129	1	0	0	1	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0026	3155	1	0	0	1	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0027	3129	1	0	0	0	1	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0028	3129	1	0	1	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0029	3129	1	0	0	1	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0030	3129	1	1	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0031	3129	1	0	0	1	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0032	3129	1	1	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0033	3129	1	0	0	1	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0034	3129	1	1	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0035	3129	1	1	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0036	3129	1	1	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0037	3129	1	0	0	1	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0038	3129	1	0	0	0	0	1	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0039	3129	1	1	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0040	3129	1	0	0	0	0	1	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0041	3129	1	0	1	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0042	3129	1	0	0	1	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPOUT1_chr9_128814651_128834794	0/0	t0043	3129	1	1	0	0	0	0	copy fasta	SPOUT1	chr9	128814651	128834794
SPP1_chr4_87970714_87988411	1/1	t0001	617	220	62	52	65	11	28	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	t0002	617	103	3	16	75	3	6	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	t0003	617	90	11	11	58	2	8	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	t0004	617	13	12	1	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	t0005	617	3	2	1	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	t0006	617	2	0	0	0	2	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	t0007	617	1	1	0	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	t0008	617	1	1	0	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	t0009	617	1	1	0	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	t0010	617	1	0	1	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP1_chr4_87970714_87988411	0/0	t0011	617	1	1	0	0	0	0	copy fasta	SPP1	chr4	87970714	87988411
SPP2_chr2_234045702_234082134	1/1	t0001	386	412	77	69	212	16	36	copy fasta	SPP2	chr2	234045702	234082134
SPP2_chr2_234045702_234082134	0/0	t0002	386	18	14	3	0	0	1	copy fasta	SPP2	chr2	234045702	234082134
SPP2_chr2_234045702_234082134	0/0	t0003	386	1	0	0	0	0	1	copy fasta	SPP2	chr2	234045702	234082134
SPP2_chr2_234045702_234082134	0/0	t0004	386	1	1	0	0	0	0	copy fasta	SPP2	chr2	234045702	234082134
SPP2_chr2_234045702_234082134	0/0	t0005	386	1	1	0	0	0	0	copy fasta	SPP2	chr2	234045702	234082134
SPP2_chr2_234045702_234082134	0/0	t0006	386	1	1	0	0	0	0	copy fasta	SPP2	chr2	234045702	234082134
SPPL2A_chr15_50697266_50770706	0/0	t0001	5708	36	7	7	19	2	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0002	5707	14	0	0	11	2	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0003	5710	14	0	5	8	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0004	5713	13	1	2	9	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0005	5708	12	0	6	0	1	5	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0006	5708	12	11	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/1	t0007	5708	11	1	5	0	0	4	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0008	5710	7	0	0	7	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	1/0	t0009	5708	6	5	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0010	5708	6	0	1	3	0	2	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0011	5716	6	0	2	3	0	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0012	5709	5	1	1	3	0	0	copy fasta	SPPL2A	chr15	50697266	50770706