JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPPL2A_chr15_50697266_50770706	0/0	t0063	5718	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0064	5707	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0065	5713	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0066	5707	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0067	5711	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0068	5693	1	0	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0069	5708	1	0	0	0	0	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0070	5710	1	0	0	0	0	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0071	5711	1	0	0	0	0	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0072	5710	1	0	0	0	0	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0073	5707	1	0	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0074	5709	1	0	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0075	5706	1	0	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0076	5707	1	0	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0077	5707	1	0	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0078	5707	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0079	5710	1	0	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0080	5709	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0081	5711	1	0	0	1	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0082	5709	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0083	5707	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0084	5711	1	0	0	1	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0085	5709	1	0	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0086	5711	1	0	0	0	0	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0087	5709	1	0	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0088	5708	1	0	0	1	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0089	5708	1	0	0	1	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0090	5708	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0091	5711	1	0	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0092	5710	1	0	0	0	0	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0093	5708	1	0	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0094	5719	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0095	5695	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0096	5719	1	0	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0097	5697	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0098	5708	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0099	5710	1	0	0	0	0	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0100	5708	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0101	5711	1	0	0	1	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0102	5710	1	0	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0103	5710	1	0	0	0	0	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0104	5711	1	0	0	1	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0105	5709	1	0	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0106	5709	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0107	5712	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0108	5718	1	1	0	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0109	5708	1	0	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0110	5708	1	0	0	1	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0111	5709	1	0	0	1	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0112	5710	1	0	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706