Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ACP3_chr3_132312407_132363841	0/0	t0035	2014	1	1	0	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0036	2022	1	0	1	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0037	2006	1	1	0	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP3_chr3_132312407_132363841	0/0	t0038	2026	1	0	1	0	0	0	copy fasta	ACP3	chr3	132312407	132363841
ACP4_chr19_50785415_50800219	1/1	t0001	62	380	88	84	148	14	44	copy fasta	ACP4	chr19	50785415	50800219
ACP5_chr19_11569660_11582645	0/0	t0001	404	228	72	33	93	8	22	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	1/1	t0002	404	213	24	47	104	10	26	copy fasta	ACP5	chr19	11569660	11582645
ACP5_chr19_11569660_11582645	0/0	t0003	403	3	2	0	1	0	0	copy fasta	ACP5	chr19	11569660	11582645
ACP6_chr1_147637230_147675524	0/0	t0001	5673	75	20	12	36	2	5	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0002	5673	64	5	12	33	3	11	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0003	5673	62	0	5	51	2	4	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0004	5673	47	6	13	14	6	8	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0005	5673	22	3	2	15	1	1	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0006	5673	13	10	0	0	0	3	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0007	5673	10	10	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0008	5673	9	0	7	1	0	1	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0009	5673	8	0	0	8	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/1	t0010	5673	8	0	3	2	0	2	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0011	5673	6	6	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0012	5673	6	0	0	6	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0013	5673	4	4	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0014	5672	4	0	1	3	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0015	5673	4	0	0	4	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0016	5673	4	0	0	4	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0017	5673	3	0	3	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0018	5670	3	3	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0019	5673	2	0	0	0	0	2	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0020	5673	2	2	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0021	5672	2	0	0	1	0	1	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0022	5673	2	2	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0023	5673	2	0	1	1	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0024	5673	2	0	0	2	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0025	5673	2	0	2	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0026	5673	2	2	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0027	5673	2	0	0	2	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0028	5673	1	0	0	1	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0029	5673	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0030	5673	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0031	5654	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0032	5673	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0033	5673	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0034	5672	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0035	5672	1	0	0	1	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0036	5673	1	0	0	1	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0037	5671	1	0	0	1	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0038	5673	1	0	0	1	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0039	5670	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0040	5670	1	1	0	0	0	0	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0041	5673	1	0	0	0	0	1	copy fasta	ACP6	chr1	147637230	147675524
ACP6_chr1_147637230_147675524	0/0	t0042	5732	1	0	0	1	0	0	copy fasta	ACP6	chr1	147637230	147675524