Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BIRC5_chr17_78209253_78230635	0/0	t0025	2146	1	0	0	1	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0026	2146	1	0	0	0	0	1	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0027	2146	1	0	0	1	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0028	2146	1	0	1	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0029	2146	1	0	0	1	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0030	2146	1	1	0	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0031	2146	1	1	0	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0032	2146	1	1	0	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0033	2143	1	0	1	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0034	2143	1	1	0	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0035	2141	1	1	0	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0036	2141	1	0	0	1	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0037	2142	1	0	0	1	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0038	2143	1	0	1	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0039	2146	1	0	1	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0040	2144	1	0	0	1	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0041	2146	1	0	0	0	0	1	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0042	2133	1	0	0	0	0	1	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0043	2130	1	0	1	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC5_chr17_78209253_78230635	0/0	t0044	2131	1	0	1	0	0	0	copy fasta	BIRC5	chr17	78209253	78230635
BIRC6_chr2_32352023_32623878	0/0	t0001	1113	98	29	20	36	5	8	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	t0002	1114	83	10	24	41	3	5	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	1/1	t0003	1114	77	36	17	11	4	7	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	t0004	1114	6	6	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	t0005	1113	3	3	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	t0006	1114	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	t0007	1114	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	t0008	1114	1	0	1	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	t0009	1114	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	t0010	1114	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	t0011	1114	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC6_chr2_32352023_32623878	0/0	t0012	1113	1	1	0	0	0	0	copy fasta	BIRC6	chr2	32352023	32623878
BIRC7_chr20_63230905_63245495	1/1	t0001	438	295	75	58	107	14	39	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	t0002	438	1	0	0	1	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	t0003	438	1	0	0	0	0	1	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	t0004	438	1	1	0	0	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	t0005	438	1	1	0	0	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIRC7_chr20_63230905_63245495	0/0	t0006	438	1	1	0	0	0	0	copy fasta	BIRC7	chr20	63230905	63245495
BIVM_chr13_102794119_102846533	0/0	t0001	2279	117	18	28	59	3	9	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0002	2278	101	11	12	65	3	10	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/1	t0003	2279	74	8	27	18	7	13	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0004	2278	20	5	2	13	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0005	2278	16	14	1	1	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0006	2278	11	10	1	0	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0007	2279	7	0	0	7	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0008	2275	7	4	3	0	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0009	2280	6	1	0	3	0	2	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	1/0	t0010	2278	4	3	0	0	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0011	2279	3	1	0	2	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0012	2278	3	2	1	0	0	0	copy fasta	BIVM	chr13	102794119	102846533