JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
SPPL2A_chr15_50697266_50770706	0/0	t0113	5708	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0114	5709	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0115	5710	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0116	5708	1	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0117	5708	1	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0118	5690	1	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0119	5735	1	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0120	5733	1	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0121	5700	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0122	5699	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0123	5707	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0124	5706	1	0	1	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0125	5706	1	0	1	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0126	5707	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0127	5707	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0128	5707	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0129	5718	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0130	5708	1	0	0	0	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0131	5707	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0132	5708	1	0	1	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0133	5707	1	0	0	0	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0134	5707	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0135	5710	1	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0136	5710	1	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0137	5711	1	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0138	5734	1	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0139	5732	1	1	0	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0140	5715	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0141	5710	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0142	5713	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0143	5710	1	0	1	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0144	5715	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0145	5714	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0146	5714	1	0	0	0	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0147	5710	1	0	0	0	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0148	5710	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0149	5714	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0150	5716	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0151	5714	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0152	5711	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0153	5714	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0154	5711	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0155	5714	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0156	5715	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0157	5712	1	0	1	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0158	5711	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0159	5711	1	0	0	0	1	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0160	5710	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0161	5706	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2A_chr15_50697266_50770706	0/0	t0162	5707	1	0	0	1	0	copy fasta	SPPL2A	chr15	50697266	50770706