JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPPL2A_chr15_50697266_50770706	0/0	t0163	5709	1	0	0	1	0	0	copy fasta	SPPL2A	chr15	50697266	50770706
SPPL2B_chr19_2323684_2360095	0/1	t0001	1913	178	30	27	96	5	19	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0002	1919	139	11	42	55	11	20	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0003	1913	16	16	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0004	1913	15	14	1	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	1/0	t0005	1913	10	0	3	5	0	1	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0006	1909	6	6	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0007	1913	5	5	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0008	1913	5	0	3	0	0	2	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0009	1913	4	3	0	0	0	1	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0010	1913	4	0	0	4	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0011	1909	4	1	0	0	0	3	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0012	1913	3	3	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0013	1913	3	0	0	3	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0014	1913	3	0	1	2	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0015	1919	2	0	0	0	0	2	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0016	1913	2	0	0	0	0	2	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0017	1909	2	2	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0018	1913	1	0	1	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0019	1913	1	1	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0020	1913	1	0	1	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0021	1919	1	1	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0022	1919	1	0	1	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0023	1913	1	0	0	1	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0024	1913	1	0	0	1	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0025	1913	1	1	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0026	1913	1	0	0	1	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0027	1913	1	1	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0028	1913	1	1	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0029	1913	1	1	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2B_chr19_2323684_2360095	0/0	t0030	1964	1	1	0	0	0	0	copy fasta	SPPL2B	chr19	2323684	2360095
SPPL2C_chr17_45839881_45852067	0/0	t0001	133	291	42	58	152	9	30	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/1	t0002	133	50	27	12	7	1	2	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	t0003	133	45	24	10	1	4	6	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL2C_chr17_45839881_45852067	0/0	t0004	133	5	5	0	0	0	0	copy fasta	SPPL2C	chr17	45839881	45852067
SPPL3_chr12_120757510_120909358	0/1	t0001	2982	49	6	11	22	3	6	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0002	2982	47	5	7	30	2	3	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0003	2982	43	4	1	33	3	2	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0004	2981	41	2	7	24	5	3	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0005	2987	25	23	2	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0006	2991	17	0	0	16	0	1	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0007	2981	14	13	1	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0008	2985	13	9	2	0	2	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0009	2983	11	5	1	0	0	5	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0010	2983	8	0	2	0	0	6	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0011	2983	8	0	0	8	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0012	2983	5	3	2	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0013	2983	4	0	0	3	0	1	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0014	2982	3	0	0	0	0	3	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0015	2981	3	0	0	3	0	0	copy fasta	SPPL3	chr12	120757510	120909358