JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPPL3_chr12_120757510_120909358	0/0	t0016	2984	2	1	1	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0017	2982	2	0	2	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0018	2986	2	2	0	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0019	2982	2	0	0	2	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0020	2985	1	1	0	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0021	2987	1	1	0	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0022	2984	1	1	0	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0023	2985	1	0	0	1	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0024	2982	1	0	1	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0025	2980	1	0	0	1	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0026	2989	1	0	0	1	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0027	2992	1	0	0	1	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0028	2987	1	1	0	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0029	2979	1	0	0	1	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0030	2981	1	0	0	0	1	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	1/0	t0031	2981	1	0	0	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0032	2981	1	1	0	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0033	2982	1	0	0	1	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0034	2982	1	1	0	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0035	2982	1	0	1	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0036	2983	1	0	1	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0037	2982	1	1	0	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0038	2981	1	0	1	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0039	2982	1	0	0	1	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPPL3_chr12_120757510_120909358	0/0	t0040	2983	1	0	1	0	0	0	copy fasta	SPPL3	chr12	120757510	120909358
SPRED1_chr15_38247836_38362249	0/0	t0001	5936	78	11	15	41	2	9	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/1	t0002	5936	78	0	7	63	0	7	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0003	5940	51	0	5	39	1	6	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0004	5932	39	15	12	0	2	10	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0005	5936	31	5	9	6	5	6	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	1/0	t0006	5936	16	14	1	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0007	5936	9	8	1	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0008	5941	7	7	0	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0009	5936	7	6	1	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0010	5936	5	5	0	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0011	5936	4	0	0	4	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0012	5936	4	4	0	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0013	5941	3	3	0	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0014	5940	3	2	1	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0015	5940	3	0	3	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0016	5936	3	3	0	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0017	5936	3	0	3	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0018	5936	2	2	0	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0019	5943	2	2	0	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0020	5941	2	2	0	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0021	5940	2	0	0	2	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0022	5936	2	0	0	2	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0023	5941	1	1	0	0	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0024	5936	1	0	0	1	0	0	copy fasta	SPRED1	chr15	38247836	38362249
SPRED1_chr15_38247836_38362249	0/0	t0025	5942	1	0	0	0	0	1	copy fasta	SPRED1	chr15	38247836	38362249