JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPRING1_chr12_116705171_116743069	0/0	t0027	7823	2	0	0	2	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0028	7825	2	0	0	2	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0029	7815	2	2	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0030	7815	2	2	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0031	7811	2	0	1	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0032	7813	2	1	1	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0033	7814	2	1	1	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0034	7820	2	0	1	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0035	7822	2	0	0	2	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0036	7819	2	1	1	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0037	7819	2	0	1	0	1	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0038	7810	1	0	1	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0039	7809	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0040	7809	1	0	0	0	0	1	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0041	7824	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0042	7820	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0043	7822	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0044	7825	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0045	7823	1	0	0	0	1	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0046	7795	1	0	0	0	0	1	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0047	7823	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0048	7823	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0049	7807	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0050	7828	1	0	0	0	0	1	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0051	7820	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0052	7824	1	0	0	0	0	1	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0053	7823	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0054	7825	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0055	7815	1	0	0	0	1	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0056	7815	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0057	7812	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0058	7813	1	0	1	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0059	7813	1	0	0	0	0	1	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0060	7825	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0061	7809	1	0	0	0	0	1	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0062	7809	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0063	7813	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0064	7813	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0065	7809	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0066	7812	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0067	7814	1	0	0	0	0	1	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0068	7826	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0069	7812	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0070	7813	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0071	7813	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0072	7813	1	0	0	0	0	1	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0073	7813	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0074	7817	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0075	7819	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0076	7813	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069