JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPRING1_chr12_116705171_116743069	0/0	t0077	7813	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0078	7814	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0079	7813	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0080	7813	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0081	7812	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0082	7823	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0083	7824	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0084	7817	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0085	7808	1	0	1	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0086	7809	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0087	7819	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0088	7821	1	1	0	0	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRING1_chr12_116705171_116743069	0/0	t0089	7813	1	0	0	1	0	0	copy fasta	SPRING1	chr12	116705171	116743069
SPRN_chr10_133415666_133429625	0/1	t0001	2731	115	8	18	64	6	18	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0002	2730	82	9	14	46	4	9	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0003	2730	34	24	3	5	1	1	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0004	2740	27	1	6	19	0	1	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0005	2741	20	0	5	12	2	1	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0006	2739	16	0	3	12	0	1	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0007	2738	16	2	0	12	0	2	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0008	2742	14	0	1	10	2	1	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0009	2729	14	11	1	2	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0010	2732	13	0	5	4	0	4	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0011	2730	11	1	8	0	1	1	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0012	2739	9	0	0	8	0	1	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0013	2742	6	0	2	3	0	1	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0014	2741	6	0	3	1	0	2	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0015	2740	6	0	0	5	0	1	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	1/0	t0016	2730	6	5	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0017	2729	5	4	1	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0018	2743	5	0	1	4	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0019	2728	4	3	1	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0020	2729	4	3	1	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0021	2731	4	0	4	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0022	2730	3	3	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0023	2731	3	3	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0024	2730	3	0	0	3	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0025	2731	2	1	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0026	2730	2	0	2	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0027	2733	2	0	1	0	1	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0028	2732	2	2	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0029	2738	2	0	0	2	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0030	2728	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0031	2730	1	0	1	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0032	2730	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0033	2730	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0034	2730	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0035	2730	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0036	2746	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0037	2744	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625