JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPRN_chr10_133415666_133429625	0/0	t0038	2742	1	0	0	0	0	1	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0039	2738	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0040	2730	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0041	2730	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0042	2731	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0043	2730	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0044	2730	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0045	2729	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0046	2738	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0047	2731	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0048	2732	1	0	1	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0049	2730	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0050	2733	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0051	2733	1	0	1	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0052	2731	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0053	2731	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0054	2730	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0055	2730	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0056	2730	1	0	0	0	0	1	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0057	2737	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0058	2740	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0059	2744	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0060	2739	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0061	2738	1	0	0	0	1	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0062	2732	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0063	2731	1	0	1	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0064	2732	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0065	2731	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0066	2731	1	1	0	0	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRN_chr10_133415666_133429625	0/0	t0067	2740	1	0	0	1	0	0	copy fasta	SPRN	chr10	133415666	133429625
SPRR1A_chr1_152979081_152990814	0/1	t0001	379	230	53	28	117	6	25	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	1/0	t0002	379	141	21	34	67	5	13	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	0/0	t0003	379	15	15	0	0	0	0	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	0/0	t0004	379	7	0	3	1	3	0	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	0/0	t0005	379	5	5	0	0	0	0	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	0/0	t0006	379	1	0	0	1	0	0	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	0/0	t0007	379	1	1	0	0	0	0	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	0/0	t0008	379	1	0	1	0	0	0	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1A_chr1_152979081_152990814	0/0	t0009	379	1	1	0	0	0	0	copy fasta	SPRR1A	chr1	152979081	152990814
SPRR1B_chr1_153026203_153037900	1/0	t0001	350	223	50	45	93	11	23	copy fasta	SPRR1B	chr1	153026203	153037900
SPRR1B_chr1_153026203_153037900	0/1	t0002	350	218	38	33	116	7	23	copy fasta	SPRR1B	chr1	153026203	153037900
SPRR1B_chr1_153026203_153037900	0/0	t0003	350	3	0	0	3	0	0	copy fasta	SPRR1B	chr1	153026203	153037900
SPRR2A_chr1_153051120_153062512	1/1	t0001	459	394	72	74	193	13	40	copy fasta	SPRR2A	chr1	153051120	153062512
SPRR2A_chr1_153051120_153062512	0/0	t0002	459	22	0	6	16	0	0	copy fasta	SPRR2A	chr1	153051120	153062512
SPRR2A_chr1_153051120_153062512	0/0	t0003	459	13	4	4	0	1	4	copy fasta	SPRR2A	chr1	153051120	153062512
SPRR2A_chr1_153051120_153062512	0/0	t0004	459	7	7	0	0	0	0	copy fasta	SPRR2A	chr1	153051120	153062512
SPRR2A_chr1_153051120_153062512	0/0	t0005	459	4	0	0	4	0	0	copy fasta	SPRR2A	chr1	153051120	153062512
SPRR2A_chr1_153051120_153062512	0/0	t0006	459	1	0	0	1	0	0	copy fasta	SPRR2A	chr1	153051120	153062512
SPRR2A_chr1_153051120_153062512	0/0	t0007	459	1	1	0	0	0	0	copy fasta	SPRR2A	chr1	153051120	153062512
SPRR2B_chr1_153065226_153076611	1/0	t0001	458	318	73	56	152	10	26	copy fasta	SPRR2B	chr1	153065226	153076611