JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPRR2B_chr1_153065226_153076611	0/1	t0002	458	84	16	18	30	6	13	copy fasta	SPRR2B	chr1	153065226	153076611
SPRR2B_chr1_153065226_153076611	0/0	t0003	458	18	0	0	18	0	0	copy fasta	SPRR2B	chr1	153065226	153076611
SPRR2B_chr1_153065226_153076611	0/0	t0004	458	5	0	0	5	0	0	copy fasta	SPRR2B	chr1	153065226	153076611
SPRR2B_chr1_153065226_153076611	0/0	t0005	458	2	2	0	0	0	0	copy fasta	SPRR2B	chr1	153065226	153076611
SPRR2B_chr1_153065226_153076611	0/0	t0006	396	1	0	0	1	0	0	copy fasta	SPRR2B	chr1	153065226	153076611
SPRR2B_chr1_153065226_153076611	0/0	t0007	458	1	0	0	0	0	1	copy fasta	SPRR2B	chr1	153065226	153076611
SPRR2B_chr1_153065226_153076611	0/0	t0008	458	1	1	0	0	0	0	copy fasta	SPRR2B	chr1	153065226	153076611
SPRR2D_chr1_153034732_153046120	0/0	t0001	459	198	32	30	111	6	19	copy fasta	SPRR2D	chr1	153034732	153046120
SPRR2D_chr1_153034732_153046120	1/0	t0002	459	190	22	48	88	9	22	copy fasta	SPRR2D	chr1	153034732	153046120
SPRR2D_chr1_153034732_153046120	0/0	t0003	459	32	27	0	5	0	0	copy fasta	SPRR2D	chr1	153034732	153046120
SPRR2D_chr1_153034732_153046120	0/0	t0004	458	13	4	4	0	1	4	copy fasta	SPRR2D	chr1	153034732	153046120
SPRR2D_chr1_153034732_153046120	0/0	t0005	459	9	0	0	9	0	0	copy fasta	SPRR2D	chr1	153034732	153046120
SPRR2D_chr1_153034732_153046120	0/0	t0006	459	4	0	0	3	0	1	copy fasta	SPRR2D	chr1	153034732	153046120
SPRR2D_chr1_153034732_153046120	0/0	t0007	459	2	2	0	0	0	0	copy fasta	SPRR2D	chr1	153034732	153046120
SPRR2D_chr1_153034732_153046120	0/0	t0008	459	2	2	0	0	0	0	copy fasta	SPRR2D	chr1	153034732	153046120
SPRR2D_chr1_153034732_153046120	0/0	t0009	459	2	0	0	2	0	0	copy fasta	SPRR2D	chr1	153034732	153046120
SPRR2D_chr1_153034732_153046120	0/0	t0010	459	1	1	0	0	0	0	copy fasta	SPRR2D	chr1	153034732	153046120
SPRR2E_chr1_153088135_153099526	1/1	t0001	461	441	80	85	209	16	49	copy fasta	SPRR2E	chr1	153088135	153099526
SPRR2E_chr1_153088135_153099526	0/0	t0002	461	4	4	0	0	0	0	copy fasta	SPRR2E	chr1	153088135	153099526
SPRR2E_chr1_153088135_153099526	0/0	t0003	461	3	3	0	0	0	0	copy fasta	SPRR2E	chr1	153088135	153099526
SPRR2E_chr1_153088135_153099526	0/0	t0004	461	2	2	0	0	0	0	copy fasta	SPRR2E	chr1	153088135	153099526
SPRR2E_chr1_153088135_153099526	0/0	t0005	461	2	2	0	0	0	0	copy fasta	SPRR2E	chr1	153088135	153099526
SPRR2E_chr1_153088135_153099526	0/0	t0006	461	2	0	1	0	0	1	copy fasta	SPRR2E	chr1	153088135	153099526
SPRR2E_chr1_153088135_153099526	0/0	t0007	461	1	1	0	0	0	0	copy fasta	SPRR2E	chr1	153088135	153099526
SPRR2E_chr1_153088135_153099526	0/0	t0008	461	1	0	0	1	0	0	copy fasta	SPRR2E	chr1	153088135	153099526
SPRR2F_chr1_153107121_153118516	1/0	t0001	457	348	85	56	171	8	27	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2F_chr1_153107121_153118516	0/1	t0002	457	83	5	20	38	4	15	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2F_chr1_153107121_153118516	0/0	t0003	457	1	1	0	0	0	0	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2F_chr1_153107121_153118516	0/0	t0004	457	1	0	0	1	0	0	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2F_chr1_153107121_153118516	0/0	t0005	457	1	1	0	0	0	0	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2F_chr1_153107121_153118516	0/0	t0006	457	1	0	0	1	0	0	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2F_chr1_153107121_153118516	0/0	t0007	457	1	0	0	1	0	0	copy fasta	SPRR2F	chr1	153107121	153118516
SPRR2G_chr1_153144582_153155890	0/1	t0001	368	191	16	32	112	8	22	copy fasta	SPRR2G	chr1	153144582	153155890
SPRR2G_chr1_153144582_153155890	1/0	t0002	368	175	49	29	68	4	24	copy fasta	SPRR2G	chr1	153144582	153155890
SPRR2G_chr1_153144582_153155890	0/0	t0003	368	55	28	3	24	0	0	copy fasta	SPRR2G	chr1	153144582	153155890
SPRR2G_chr1_153144582_153155890	0/0	t0004	368	1	1	0	0	0	0	copy fasta	SPRR2G	chr1	153144582	153155890
SPRR2G_chr1_153144582_153155890	0/0	t0005	368	1	1	0	0	0	0	copy fasta	SPRR2G	chr1	153144582	153155890
SPRR2G_chr1_153144582_153155890	0/0	t0006	368	1	1	0	0	0	0	copy fasta	SPRR2G	chr1	153144582	153155890
SPRR3_chr1_152996749_153008856	1/0	t0001	391	178	36	40	72	10	19	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	t0002	391	143	30	14	87	0	12	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/1	t0003	391	70	2	21	27	6	13	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	t0004	391	14	14	0	0	0	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	t0005	391	6	6	0	0	0	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	t0006	391	3	0	0	3	0	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	t0007	391	2	2	0	0	0	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	t0008	391	1	1	0	0	0	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	t0009	391	1	1	0	0	0	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	t0010	391	1	0	0	1	0	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR3_chr1_152996749_153008856	0/0	t0011	391	1	0	1	0	0	0	copy fasta	SPRR3	chr1	152996749	153008856
SPRR4_chr1_152965648_152977574	1/1	t0001	512	410	70	82	196	16	44	copy fasta	SPRR4	chr1	152965648	152977574