JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPRR4_chr1_152965648_152977574	0/0	t0002	512	17	17	0	0	0	0	copy fasta	SPRR4	chr1	152965648	152977574
SPRR4_chr1_152965648_152977574	0/0	t0003	509	6	0	0	6	0	0	copy fasta	SPRR4	chr1	152965648	152977574
SPRR4_chr1_152965648_152977574	0/0	t0004	512	6	6	0	0	0	0	copy fasta	SPRR4	chr1	152965648	152977574
SPRR4_chr1_152965648_152977574	0/0	t0005	512	1	1	0	0	0	0	copy fasta	SPRR4	chr1	152965648	152977574
SPRR5_chr1_152942206_152954255	1/0	t0001	436	334	77	62	152	9	33	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/1	t0002	436	70	2	17	30	5	15	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	t0003	436	8	0	0	8	0	0	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	t0004	436	8	7	1	0	0	0	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	t0005	436	8	8	0	0	0	0	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	t0006	436	6	0	0	6	0	0	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	t0007	436	1	0	0	0	0	1	copy fasta	SPRR5	chr1	152942206	152954255
SPRR5_chr1_152942206_152954255	0/0	t0008	436	1	0	0	0	0	1	copy fasta	SPRR5	chr1	152942206	152954255
SPRTN_chr1_231333293_231360023	1/1	t0001	1754	144	25	19	75	3	20	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	t0002	1754	144	19	28	76	6	15	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	t0003	1754	22	13	2	1	3	3	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	t0004	1754	8	8	0	0	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	t0005	1754	7	0	1	6	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	t0006	1754	7	7	0	0	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	t0007	1754	5	5	0	0	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	t0008	1754	4	3	1	0	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	t0009	1754	2	0	0	1	0	1	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	t0010	1754	2	2	0	0	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	t0011	1754	2	2	0	0	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	t0012	1754	2	1	1	0	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	t0013	1754	1	0	0	0	0	1	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	t0014	1754	1	1	0	0	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRTN_chr1_231333293_231360023	0/0	t0015	1754	1	0	0	1	0	0	copy fasta	SPRTN	chr1	231333293	231360023
SPRY1_chr4_123391795_123408755	1/0	t0001	1644	208	34	26	121	5	21	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/1	t0002	1640	119	12	17	72	7	10	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0003	1645	25	18	5	2	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0004	1645	12	10	2	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0005	1643	11	2	6	0	2	1	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0006	1641	8	1	5	1	0	1	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0007	1643	6	5	1	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0008	1650	3	3	0	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0009	1651	2	2	0	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0010	1644	2	0	0	2	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0011	1644	2	2	0	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0012	1644	1	0	0	0	0	1	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0013	1642	1	0	1	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0014	1644	1	1	0	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0015	1644	1	1	0	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0016	1644	1	0	1	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0017	1644	1	0	0	1	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0018	1644	1	1	0	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0019	1644	1	0	0	0	0	1	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0020	1650	1	1	0	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0021	1640	1	1	0	0	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0022	1644	1	0	0	1	0	0	copy fasta	SPRY1	chr4	123391795	123408755
SPRY1_chr4_123391795_123408755	0/0	t0023	1640	1	0	0	0	0	1	copy fasta	SPRY1	chr4	123391795	123408755