Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BIVM_chr13_102794119_102846533	0/0	t0013	2275	3	3	0	0	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0014	2278	3	0	2	0	1	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0015	2279	3	3	0	0	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0016	2279	3	0	0	3	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0017	2279	2	1	0	1	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0018	2279	2	0	0	0	0	2	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0019	2278	2	0	0	2	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0020	2279	1	0	0	1	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0021	2278	1	1	0	0	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0022	2278	1	0	0	0	0	1	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0023	2275	1	0	0	1	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0024	2275	1	1	0	0	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0025	2274	1	1	0	0	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0026	2274	1	0	0	1	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0027	2279	1	0	0	1	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0028	2279	1	0	0	1	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0029	2280	1	0	0	1	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0030	2278	1	1	0	0	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0031	2279	1	1	0	0	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0032	2278	1	0	1	0	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0033	2279	1	0	0	1	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0034	2278	1	0	0	1	0	0	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0035	2278	1	0	0	0	0	1	copy fasta	BIVM	chr13	102794119	102846533
BIVM_chr13_102794119_102846533	0/0	t0036	2274	1	1	0	0	0	0	copy fasta	BIVM	chr13	102794119	102846533
BLACAT1_chr1_205429886_205461045	0/1	t0001	6206	166	11	37	84	4	29	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0002	6206	25	0	12	13	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	1/0	t0003	6205	18	15	2	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0004	6206	18	7	0	8	0	3	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0005	6206	15	0	6	0	5	4	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0006	6206	14	0	5	7	0	2	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0007	6206	14	5	7	0	2	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0008	6206	9	8	1	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0009	6206	7	7	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0010	6206	7	3	0	4	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0011	6206	6	3	1	0	0	2	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0012	6206	6	6	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0013	6206	5	0	0	5	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0014	6206	5	0	0	5	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0015	6206	5	0	0	5	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0016	6205	5	5	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0017	6206	5	5	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0018	6205	4	0	0	4	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0019	6206	4	0	0	0	0	4	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0020	6206	4	2	2	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0021	6206	3	0	0	3	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0022	6206	3	1	1	0	1	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0023	6205	2	1	0	0	1	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0024	6206	2	0	0	2	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0025	6206	2	0	0	0	2	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0026	6206	2	0	0	2	0	0	copy fasta	BLACAT1	chr1	205429886	205461045