JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPRY2_chr13_80330976_80346126	1/0	t0001	1339	134	51	12	50	6	14	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/1	t0002	1339	114	3	27	65	5	13	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	t0003	1339	88	38	4	44	1	1	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	t0004	1339	52	1	24	16	4	7	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	t0005	1339	9	0	5	0	1	3	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	t0006	1339	8	0	0	8	0	0	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	t0007	1339	6	0	0	6	0	0	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	t0008	1339	3	0	0	0	0	3	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	t0009	1339	2	0	0	1	0	1	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	t0010	1339	1	1	0	0	0	0	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	t0011	1339	1	1	0	0	0	0	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	t0012	1339	1	0	0	0	1	0	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	t0013	1339	1	0	0	1	0	0	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	t0014	1339	1	1	0	0	0	0	copy fasta	SPRY2	chr13	80330976	80346126
SPRY2_chr13_80330976_80346126	0/0	t0015	1339	1	0	0	1	0	0	copy fasta	SPRY2	chr13	80330976	80346126
SPRY3_chrX_155607586_155787459	0/0	t0001	8098	11	0	4	3	2	2	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0002	8100	8	0	3	4	1	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0003	8100	7	7	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0004	8109	7	0	1	5	0	1	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0005	8111	6	0	1	5	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0006	8107	6	0	0	5	0	1	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0007	8108	4	4	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0008	8113	4	0	2	2	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0009	8111	4	0	2	2	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0010	8105	4	2	2	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0011	8111	4	0	0	2	0	2	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0012	8102	3	0	1	2	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0013	8113	3	0	0	2	0	1	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0014	8113	3	0	2	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0015	8108	2	2	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0016	8106	2	0	0	2	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0017	8094	2	0	1	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0018	8106	2	0	2	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0019	8104	2	2	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0020	8107	2	2	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0021	8095	2	2	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0022	8119	2	0	0	2	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0023	8115	2	0	0	1	0	1	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0024	8113	2	0	0	2	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0025	8111	2	0	1	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0026	8107	2	0	0	0	0	2	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0027	8109	2	0	1	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0028	8106	2	2	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0029	8104	2	1	1	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0030	8107	2	0	1	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0031	8103	2	0	1	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0032	8113	2	0	0	2	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0033	8111	2	0	0	2	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0034	8111	2	0	0	2	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0035	8109	2	0	0	2	0	0	copy fasta	SPRY3	chrX	155607586	155787459