JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPRY3_chrX_155607586_155787459	0/0	t0036	8114	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0037	8110	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0038	8111	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0039	8078	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0040	8106	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	1/0	t0041	8065	1	0	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0042	8107	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0043	8098	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0044	8104	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0045	8114	1	0	0	0	0	1	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0046	8106	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0047	8106	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0048	8104	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0049	8104	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0050	8104	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0051	8102	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0052	8100	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0053	8100	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0054	8098	1	0	0	0	0	1	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0055	8098	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0056	8098	1	0	1	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0057	8096	1	0	1	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0058	8100	1	0	0	0	0	1	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0059	8097	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0060	8096	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0061	8114	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0062	8121	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0063	8118	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0064	8112	1	0	1	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0065	8110	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0066	8113	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0067	8110	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0068	8108	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0069	8111	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0070	8113	1	0	0	0	0	1	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0071	8106	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0072	8109	1	0	1	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0073	8104	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0074	8108	1	0	0	0	1	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0075	8104	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0076	8102	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0077	8100	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0078	8098	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0079	8109	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0080	8102	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0081	8104	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0082	8100	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0083	8109	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0084	8109	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0085	8115	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459