JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPRY3_chrX_155607586_155787459	0/0	t0086	8115	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0087	8113	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0088	8111	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0089	8105	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0090	8113	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0091	8108	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0092	8106	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0093	8104	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0094	8105	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0095	8102	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0096	8100	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0097	8096	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0098	8098	1	0	0	0	0	1	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0099	8096	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0100	8119	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0101	8117	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0102	8117	1	0	0	0	0	1	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0103	8119	1	0	0	0	0	1	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0104	8115	1	0	0	0	0	1	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0105	8113	1	0	1	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0106	8114	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0107	8113	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0108	8113	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0109	8111	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0110	8111	1	0	1	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0111	8111	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0112	8107	1	0	1	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0113	8113	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0114	8111	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0115	8112	1	0	0	0	0	1	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0116	8111	1	0	0	0	0	1	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0117	8111	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0118	8109	1	0	0	0	0	1	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0119	8109	1	0	1	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0120	8109	1	0	0	0	0	1	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0121	8107	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0122	8109	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0123	8109	1	0	1	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0124	8107	1	0	0	0	1	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0125	8106	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0126	8106	1	0	0	0	1	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0127	8107	1	0	0	0	1	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0128	8107	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0129	8105	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0130	8103	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0131	8100	1	1	0	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0132	8101	1	0	0	0	0	1	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0133	8114	1	0	0	1	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0134	8115	1	0	1	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459
SPRY3_chrX_155607586_155787459	0/0	t0135	8111	1	0	1	0	0	0	copy fasta	SPRY3	chrX	155607586	155787459