JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPRY4_chr5_142305430_142330021	0/0	t0036	4006	2	2	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0037	4017	2	2	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0038	4013	2	1	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0039	4008	1	0	0	0	0	1	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0040	4009	1	0	1	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0041	4006	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0042	4007	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0043	4018	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0044	4016	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0045	4015	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0046	4017	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0047	4015	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0048	4020	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0049	4014	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0050	4012	1	0	1	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0051	4007	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0052	4007	1	0	1	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0053	4018	1	0	0	0	0	1	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0054	4023	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0055	4022	1	0	0	0	0	1	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0056	4020	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0057	4010	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0058	4014	1	0	0	0	0	1	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0059	4006	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0060	4012	1	0	0	0	0	1	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0061	4007	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0062	4006	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0063	4017	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0064	4015	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0065	4005	1	0	0	0	0	1	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0066	4021	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0067	4018	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0068	4020	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0069	4010	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0070	4009	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0071	4015	1	0	0	0	1	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0072	4008	1	0	1	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0073	4007	1	0	1	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0074	4007	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0075	4007	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0076	4012	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0077	4015	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0078	4007	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0079	4015	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0080	4022	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0081	4020	1	0	1	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0082	4012	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0083	4018	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0084	4008	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0085	4019	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021