JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPRY4_chr5_142305430_142330021	0/0	t0086	3998	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0087	4022	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0088	4020	1	0	1	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0089	4006	1	0	0	0	0	1	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0090	4022	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0091	3997	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0092	4019	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0093	4018	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0094	4005	1	0	1	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0095	4010	1	0	0	0	1	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0096	4017	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0097	4018	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0098	4020	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0099	4016	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0100	4014	1	0	1	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0101	4012	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0102	4002	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0103	4007	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0104	4005	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0105	4013	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0106	4013	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0107	4014	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0108	4014	1	0	0	0	0	1	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0109	4009	1	1	0	0	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRY4_chr5_142305430_142330021	0/0	t0110	4016	1	0	0	1	0	0	copy fasta	SPRY4	chr5	142305430	142330021
SPRYD3_chr12_53059316_53084390	1/0	t0001	1574	308	65	56	141	7	38	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	t0002	1574	41	1	1	38	1	0	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/1	t0003	1574	38	24	3	1	1	8	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	t0004	1574	4	0	3	0	1	0	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	t0005	1574	2	2	0	0	0	0	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	t0006	1574	1	0	1	0	0	0	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	t0007	1574	1	0	0	1	0	0	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	t0008	1574	1	0	0	1	0	0	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	t0009	1574	1	1	0	0	0	0	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	t0010	1574	1	1	0	0	0	0	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	t0011	1574	1	1	0	0	0	0	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	t0012	1574	1	1	0	0	0	0	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	t0013	1574	1	0	0	1	0	0	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	t0014	1574	1	0	0	1	0	0	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	t0015	1574	1	0	0	1	0	0	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD3_chr12_53059316_53084390	0/0	t0016	1597	1	0	0	1	0	0	copy fasta	SPRYD3	chr12	53059316	53084390
SPRYD4_chr12_56463578_56484708	0/0	t0001	10140	92	5	19	56	5	7	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0002	10136	46	9	6	28	1	2	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/1	t0003	10137	22	2	5	10	1	3	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0004	10138	17	0	6	8	2	1	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0005	10146	13	12	1	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0006	10141	8	0	1	6	0	1	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0007	9415	7	0	1	6	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0008	10137	6	1	4	0	0	1	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0009	10141	5	0	0	2	1	2	copy fasta	SPRYD4	chr12	56463578	56484708