JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPRYD4_chr12_56463578_56484708	0/0	t0010	10139	4	0	0	2	0	2	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0011	10140	4	0	3	0	0	1	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0012	10138	4	0	0	3	0	1	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0013	10142	4	0	3	0	1	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0014	10140	4	0	0	4	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0015	10146	4	4	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0016	10145	4	4	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0017	10136	4	4	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0018	10136	3	0	0	1	0	2	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0019	10137	3	0	0	3	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0020	10136	3	3	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0021	10138	3	0	1	0	1	1	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0022	10137	3	3	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0023	10138	3	0	3	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0024	10139	3	0	0	3	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0025	10137	3	3	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	1/0	t0026	10146	3	2	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0027	10146	3	1	1	0	0	1	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0028	10136	2	0	1	0	1	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0029	10140	2	0	0	2	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0030	10138	2	0	0	2	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0031	10147	2	2	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0032	10137	2	0	1	0	0	1	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0033	10137	2	0	0	1	0	1	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0034	10148	2	2	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0035	10136	2	1	1	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0036	10138	2	0	1	0	0	1	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0037	10139	2	0	1	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0038	10146	2	2	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0039	10145	2	2	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0040	10147	2	1	1	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0041	10147	2	2	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0042	10146	2	1	0	0	0	1	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0043	10136	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0044	10139	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0045	10140	1	0	1	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0046	10147	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0047	10149	1	0	1	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0048	10141	1	0	1	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0049	10130	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0050	10137	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0051	10136	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0052	10136	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0053	10137	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0054	10140	1	0	0	0	1	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0055	10140	1	0	0	0	0	1	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0056	10140	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0057	10139	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0058	10136	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0059	10136	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708