JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPRYD4_chr12_56463578_56484708	0/0	t0060	10136	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0061	10140	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0062	10137	1	0	0	0	0	1	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0063	10139	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0064	10137	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0065	10140	1	0	1	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0066	10141	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0067	10141	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0068	10148	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0069	10136	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0070	10141	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0071	10141	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0072	10141	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0073	10140	1	0	0	0	0	1	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0074	10136	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0075	10136	1	0	0	0	0	1	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0076	10138	1	0	0	0	1	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0077	10138	1	0	0	0	0	1	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0078	10139	1	0	0	0	1	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0079	10138	1	0	1	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0080	10138	1	0	1	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0081	10139	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0082	10137	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0083	10136	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0084	10134	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0085	10135	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0086	10134	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0087	10145	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0088	10146	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0089	10147	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0090	10134	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0091	10147	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0092	10146	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0093	10147	1	0	1	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0094	10147	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0095	10146	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0096	10134	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0097	10146	1	0	1	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0098	10147	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0099	10145	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0100	10147	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0101	10135	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0102	10137	1	1	0	0	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0103	10136	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD4_chr12_56463578_56484708	0/0	t0104	10137	1	0	0	1	0	0	copy fasta	SPRYD4	chr12	56463578	56484708
SPRYD7_chr13_49907702_49941340	0/0	t0001	2467	87	3	11	60	1	12	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0002	2467	85	6	15	53	5	6	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	1/0	t0003	2467	82	44	7	24	0	6	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/1	t0004	2467	64	11	21	5	7	19	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0005	2467	26	12	3	7	1	3	copy fasta	SPRYD7	chr13	49907702	49941340