JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPRYD7_chr13_49907702_49941340	0/0	t0006	2467	8	0	6	0	2	0	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0007	2463	6	6	0	0	0	0	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0008	2467	5	4	1	0	0	0	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0009	2467	3	0	0	3	0	0	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0010	2467	2	2	0	0	0	0	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0011	2467	1	1	0	0	0	0	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0012	2467	1	0	0	1	0	0	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0013	2467	1	0	0	0	0	1	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0014	2467	1	1	0	0	0	0	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0015	2467	1	1	0	0	0	0	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0016	2467	1	0	0	1	0	0	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0017	2467	1	0	1	0	0	0	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0018	2467	1	0	0	1	0	0	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0019	2467	1	1	0	0	0	0	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0020	2467	1	0	1	0	0	0	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0021	2467	1	0	0	1	0	0	copy fasta	SPRYD7	chr13	49907702	49941340
SPRYD7_chr13_49907702_49941340	0/0	t0022	2467	1	0	0	0	0	1	copy fasta	SPRYD7	chr13	49907702	49941340
SPR_chr2_72882408_72897158	1/1	t0001	647	320	80	68	114	18	38	copy fasta	SPR	chr2	72882408	72897158
SPR_chr2_72882408_72897158	0/0	t0002	647	5	5	0	0	0	0	copy fasta	SPR	chr2	72882408	72897158
SPR_chr2_72882408_72897158	0/0	t0003	647	3	3	0	0	0	0	copy fasta	SPR	chr2	72882408	72897158
SPSB1_chr1_9287894_9374532	0/1	t0001	2280	52	3	21	13	1	13	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0002	2279	43	0	7	31	1	4	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0003	2279	38	4	10	16	1	7	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0004	2279	34	2	5	25	0	2	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0005	2278	23	22	1	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0006	2279	21	4	3	12	1	1	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0007	2279	20	0	5	5	1	9	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0008	2280	20	0	6	12	2	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0009	2279	17	0	3	8	1	5	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0010	2280	14	0	0	13	0	1	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0011	2279	13	12	1	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0012	2280	6	2	1	1	0	2	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0013	2279	5	5	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0014	2279	5	5	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0015	2280	4	1	2	0	1	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0016	2279	4	4	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0017	2278	4	4	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0018	2279	3	0	3	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0019	2280	3	0	0	3	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0020	2279	2	1	1	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0021	2279	2	2	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0022	2274	2	2	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0023	2279	2	2	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0024	2279	2	2	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0025	2278	2	2	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0026	2279	2	2	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0027	2279	1	0	0	0	0	1	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0028	2279	1	1	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0029	2279	1	0	0	0	0	1	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0030	2279	1	1	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532