JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPSB1_chr1_9287894_9374532	0/0	t0031	2279	1	0	1	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0032	2279	1	1	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0033	2279	1	0	0	1	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0034	2279	1	1	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0035	2278	1	1	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0036	2279	1	1	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0037	2279	1	1	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0038	2279	1	1	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0039	2279	1	0	0	1	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0040	2279	1	0	0	0	1	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0041	2280	1	0	0	1	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0042	2279	1	0	0	1	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0043	2279	1	0	0	1	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0044	2274	1	1	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0045	2279	1	0	0	1	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0046	2279	1	1	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0047	2279	1	1	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0048	2279	1	1	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0049	2278	1	1	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0050	2285	1	0	0	1	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0051	2285	1	0	0	1	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	1/0	t0052	2285	1	0	0	0	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB1_chr1_9287894_9374532	0/0	t0053	2285	1	0	0	1	0	0	copy fasta	SPSB1	chr1	9287894	9374532
SPSB2_chr12_6865935_6878303	1/0	t0001	412	231	46	44	105	12	23	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/1	t0002	412	125	41	21	41	4	17	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/0	t0003	412	31	0	0	31	0	0	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/0	t0004	412	5	3	2	0	0	0	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/0	t0005	412	2	0	2	0	0	0	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/0	t0006	412	2	2	0	0	0	0	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/0	t0007	412	1	0	0	1	0	0	copy fasta	SPSB2	chr12	6865935	6878303
SPSB2_chr12_6865935_6878303	0/0	t0008	412	1	0	1	0	0	0	copy fasta	SPSB2	chr12	6865935	6878303
SPSB3_chr16_1771712_1787571	1/1	t0001	468	387	82	74	172	15	42	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	t0002	468	25	0	0	23	1	1	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	t0003	468	6	1	2	0	0	3	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	t0004	468	6	6	0	0	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	t0005	468	4	4	0	0	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	t0006	468	3	3	0	0	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	t0007	468	3	0	0	3	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	t0008	468	1	0	0	0	0	1	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	t0009	468	1	1	0	0	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	t0010	468	1	0	0	0	0	1	copy fasta	SPSB3	chr16	1771712	1787571
SPSB3_chr16_1771712_1787571	0/0	t0011	468	1	1	0	0	0	0	copy fasta	SPSB3	chr16	1771712	1787571
SPSB4_chr3_141046347_141153611	0/0	t0001	2142	52	2	13	27	1	9	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0002	2142	44	2	11	24	1	6	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0003	2142	12	6	0	4	0	2	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0004	2142	9	3	0	5	0	1	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0005	2142	8	1	1	6	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0006	2142	7	2	0	5	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0007	2142	7	4	1	2	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0008	2142	6	4	2	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611