Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BLACAT1_chr1_205429886_205461045	0/0	t0027	6206	2	0	2	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0028	6206	2	0	0	2	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0029	6206	2	2	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0030	6206	2	2	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0031	6206	1	0	0	0	0	1	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0032	6206	1	1	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0033	6206	1	0	0	1	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0034	6206	1	0	1	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0035	6206	1	1	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0036	6206	1	0	0	1	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0037	6206	1	0	1	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0038	6206	1	0	0	1	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0039	6206	1	1	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0040	6206	1	0	0	0	0	1	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0041	6206	1	0	0	1	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0042	6206	1	0	0	0	1	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0043	6206	1	0	0	1	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0044	6206	1	0	0	1	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0045	6206	1	1	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0046	6206	1	0	1	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0047	6206	1	1	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0048	6205	1	1	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0049	6205	1	1	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0050	6206	1	0	0	1	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0051	6206	1	1	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0052	6206	1	1	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0053	6205	1	1	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0054	6206	1	0	1	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0055	6206	1	0	0	1	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0056	6206	1	1	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0057	6206	1	1	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0058	6206	1	1	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0059	6206	1	1	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLACAT1_chr1_205429886_205461045	0/0	t0060	6206	1	1	0	0	0	0	copy fasta	BLACAT1	chr1	205429886	205461045
BLCAP_chr20_37512417_37532876	0/1	t0001	1755	332	80	66	150	6	29	copy fasta	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	t0002	1757	38	9	12	4	4	9	copy fasta	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	t0003	1755	8	0	0	8	0	0	copy fasta	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	1/0	t0004	1755	6	5	0	0	0	0	copy fasta	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	t0005	1755	6	0	0	6	0	0	copy fasta	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	t0006	1755	3	0	0	3	0	0	copy fasta	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	t0007	1755	2	2	0	0	0	0	copy fasta	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	t0008	1755	2	2	0	0	0	0	copy fasta	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	t0009	1755	2	0	0	2	0	0	copy fasta	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	t0010	1755	1	0	1	0	0	0	copy fasta	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	t0011	1755	1	0	0	1	0	0	copy fasta	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	t0012	1755	1	0	1	0	0	0	copy fasta	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	t0013	1755	1	0	0	1	0	0	copy fasta	BLCAP	chr20	37512417	37532876
BLCAP_chr20_37512417_37532876	0/0	t0014	1755	1	0	0	1	0	0	copy fasta	BLCAP	chr20	37512417	37532876
BLID_chr11_122110340_122121215	1/1	t0001	550	430	96	69	201	16	46	copy fasta	BLID	chr11	122110340	122121215
BLID_chr11_122110340_122121215	0/0	t0002	550	2	1	1	0	0	0	copy fasta	BLID	chr11	122110340	122121215