JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPSB4_chr3_141046347_141153611	0/0	t0009	2142	6	4	2	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0010	2142	6	1	1	4	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0011	2142	6	3	0	2	1	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0012	2142	6	6	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0013	2142	5	3	2	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0014	2142	5	2	3	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0015	2142	4	4	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0016	2142	4	0	2	2	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0017	2142	3	2	0	1	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0018	2142	3	2	0	1	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0019	2142	3	1	0	2	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0020	2142	3	3	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0021	2142	3	0	0	3	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0022	2142	3	0	3	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0023	2142	2	2	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0024	2142	2	2	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0025	2142	2	1	1	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0026	2142	2	2	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0027	2142	2	2	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0028	2142	2	0	1	0	0	1	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0029	2142	2	2	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0030	2142	2	0	0	2	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0031	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0032	2142	1	0	0	0	1	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	1/0	t0033	2142	1	0	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0034	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0035	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0036	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0037	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0038	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0039	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0040	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0041	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0042	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0043	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0044	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0045	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0046	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0047	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0048	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0049	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0050	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0051	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0052	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/1	t0053	2142	1	0	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0054	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0055	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0056	2142	1	0	1	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0057	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0058	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611