JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPSB4_chr3_141046347_141153611	0/0	t0059	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0060	2142	1	0	1	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0061	2142	1	1	0	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0062	2142	1	0	1	0	0	0	copy fasta	SPSB4	chr3	141046347	141153611
SPSB4_chr3_141046347_141153611	0/0	t0063	2142	1	0	0	0	0	1	copy fasta	SPSB4	chr3	141046347	141153611
SPTA1_chr1_158605704_158691715	0/0	t0001	762	65	2	17	42	2	2	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0002	761	63	1	13	38	1	10	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0003	774	23	0	4	15	1	3	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0004	763	19	9	5	2	3	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0005	765	16	2	3	8	0	3	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0006	762	15	0	2	13	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0007	764	13	10	0	1	1	1	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0008	761	11	2	1	7	0	1	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0009	766	11	0	0	9	0	2	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0010	773	9	0	0	9	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0011	759	8	1	5	1	1	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/1	t0012	767	8	0	2	3	1	1	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0013	760	8	7	0	0	0	1	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	1/0	t0014	759	7	5	1	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0015	765	7	7	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0016	775	4	4	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0017	768	4	0	4	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0018	776	4	0	0	3	0	1	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0019	769	3	3	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0020	763	3	1	0	2	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0021	771	3	1	0	2	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0022	771	3	0	3	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0023	758	3	0	0	3	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0024	770	3	0	1	0	2	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0025	772	3	2	0	1	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0026	774	3	0	0	0	0	3	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0027	769	3	3	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0028	767	2	0	2	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0029	771	2	2	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0030	773	2	2	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0031	773	2	0	1	0	0	1	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0032	766	2	0	0	0	0	2	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0033	758	2	2	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0034	764	2	0	0	1	1	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0035	768	2	2	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0036	772	2	1	0	0	0	1	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0037	761	2	2	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0038	763	2	2	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0039	767	2	2	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0040	769	2	2	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0041	775	2	2	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0042	765	1	0	0	1	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0043	757	1	0	0	1	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0044	765	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0045	767	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715