JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPTA1_chr1_158605704_158691715	0/0	t0046	769	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0047	775	1	0	0	1	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0048	757	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0049	757	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0050	765	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0051	769	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0052	768	1	0	1	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0053	762	1	0	0	1	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0054	770	1	0	0	1	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0055	770	1	0	0	0	1	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0056	775	1	0	0	1	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0057	778	1	0	0	1	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0058	770	1	0	0	1	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0059	765	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0060	773	1	1	0	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTA1_chr1_158605704_158691715	0/0	t0061	773	1	0	1	0	0	0	copy fasta	SPTA1	chr1	158605704	158691715
SPTAN1_chr9_128547587_128638662	1/1	t0001	442	295	81	39	136	12	25	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	t0002	442	10	0	0	8	0	2	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	t0003	442	2	2	0	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	t0004	442	1	1	0	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	t0005	442	1	0	0	0	0	1	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	t0006	442	1	0	1	0	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	t0007	442	1	0	0	1	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTAN1_chr9_128547587_128638662	0/0	t0008	442	1	0	0	1	0	0	copy fasta	SPTAN1	chr9	128547587	128638662
SPTBN1_chr2_54451327_54676446	0/0	t0001	3121	54	1	11	35	2	5	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0002	3119	52	3	5	41	1	2	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0003	3117	51	24	7	13	2	5	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0004	3120	45	2	9	28	3	3	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/1	t0005	3118	29	7	3	7	3	8	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0006	3120	23	1	11	10	0	1	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0007	3120	18	4	8	5	0	1	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0008	3121	9	9	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0009	3117	7	0	0	7	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0010	3119	6	2	0	0	0	4	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0011	3121	4	4	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0012	3120	4	3	1	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0013	3116	4	4	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0014	3119	4	0	0	0	0	4	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0015	3118	4	3	1	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0016	3118	4	4	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0017	3119	3	0	3	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0018	3119	3	2	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0019	3118	3	3	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0020	3119	3	0	0	3	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0021	3122	2	2	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0022	3118	2	0	0	1	0	1	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0023	3116	2	0	1	0	1	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0024	3117	2	0	0	0	0	2	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0025	3119	2	2	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0026	3120	2	2	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446