JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPTBN1_chr2_54451327_54676446	0/0	t0027	3120	2	2	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0028	3121	2	0	0	0	2	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0029	3121	2	0	1	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0030	3117	1	1	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0031	3121	1	1	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0032	3117	1	0	0	0	0	1	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0033	3157	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0034	3118	1	1	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0035	3120	1	1	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0036	3117	1	0	0	0	0	1	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0037	3117	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	1/0	t0038	3117	1	0	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0039	3118	1	1	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0040	3119	1	0	1	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0041	3119	1	0	1	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0042	3120	1	1	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0043	3120	1	1	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0044	3120	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0045	3120	1	0	1	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0046	3121	1	0	0	1	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0047	3121	1	0	1	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0048	3121	1	0	0	0	0	1	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0049	3119	1	0	1	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0050	3118	1	1	0	0	0	0	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN1_chr2_54451327_54676446	0/0	t0051	3119	1	0	0	0	0	1	copy fasta	SPTBN1	chr2	54451327	54676446
SPTBN2_chr11_66677497_66734216	0/0	t0001	3965	78	8	13	44	2	11	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0002	3965	76	8	2	61	0	5	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0003	3965	32	10	3	15	1	3	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0004	3965	15	3	2	1	1	8	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0005	3963	10	8	2	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/1	t0006	3965	9	0	5	0	2	1	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0007	3965	9	4	2	0	3	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0008	3966	6	1	0	5	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0009	3964	5	1	1	2	0	1	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0010	3965	5	4	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0011	3964	4	0	0	4	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0012	3964	4	0	1	1	1	1	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0013	3965	4	0	3	0	0	1	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0014	3966	4	0	0	4	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0015	3966	4	4	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0016	3966	4	4	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0017	3965	3	1	2	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0018	3964	3	1	1	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0019	3966	3	0	1	2	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0020	3966	3	0	0	3	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0021	3963	2	2	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0022	3965	2	1	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0023	3965	2	2	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0024	3964	2	1	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0025	3965	2	0	1	0	1	0	copy fasta	SPTBN2	chr11	66677497	66734216