JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPTBN2_chr11_66677497_66734216	0/0	t0026	3965	2	2	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0027	3965	2	2	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0028	3965	2	0	2	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0029	3965	2	0	0	2	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0030	3966	2	1	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0031	3965	2	0	0	2	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0032	3965	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0033	3965	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0034	3965	1	0	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0035	3964	1	0	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0036	3963	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0037	3964	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0038	3966	1	0	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0039	3954	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0040	3964	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0041	3965	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0042	3965	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0043	3964	1	0	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0044	3964	1	0	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0045	3965	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0046	3964	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0047	3965	1	0	0	0	0	1	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0048	3964	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	1/0	t0049	3964	1	0	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0050	3965	1	0	1	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0051	3965	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0052	3966	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0053	3965	1	0	0	0	1	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0054	3965	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0055	3965	1	1	0	0	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN2_chr11_66677497_66734216	0/0	t0056	3965	1	0	0	1	0	0	copy fasta	SPTBN2	chr11	66677497	66734216
SPTBN4_chr19_40462001_40581464	1/1	t0001	1216	219	73	46	56	12	30	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	t0002	1216	5	0	2	0	2	1	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	t0003	1216	2	2	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	t0004	1216	1	0	0	1	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	t0005	1216	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	t0006	1216	1	0	0	1	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	t0007	1216	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	t0008	1216	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	t0009	1216	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	t0010	1216	1	1	0	0	0	0	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN4_chr19_40462001_40581464	0/0	t0011	1216	1	0	0	0	0	1	copy fasta	SPTBN4	chr19	40462001	40581464
SPTBN5_chr15_41843146_41899053	0/0	t0001	675	205	45	29	102	7	22	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	1/1	t0002	675	172	40	45	56	9	20	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	t0003	675	6	5	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	t0004	675	4	4	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	t0005	675	2	0	0	2	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	t0006	675	2	0	0	2	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	t0007	675	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	t0008	675	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053