JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPTBN5_chr15_41843146_41899053	0/0	t0009	675	1	0	1	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	t0010	675	1	0	0	1	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTBN5_chr15_41843146_41899053	0/0	t0011	675	1	1	0	0	0	0	copy fasta	SPTBN5	chr15	41843146	41899053
SPTB_chr14_64741283_64884907	0/0	t0001	3190	92	25	15	34	3	15	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	1/0	t0002	3191	33	8	8	13	1	2	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0003	3190	26	3	3	12	3	5	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0004	3190	17	3	1	9	1	3	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/1	t0005	3188	14	5	2	1	0	5	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0006	3190	9	1	2	2	0	4	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0007	3190	8	8	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0008	3189	7	7	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0009	3190	7	7	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0010	3190	6	4	2	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0011	3200	5	4	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0012	3189	5	3	2	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0013	3092	5	5	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0014	3188	4	0	0	0	0	4	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0015	3191	3	0	3	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0016	3190	2	2	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0017	3189	2	1	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0018	3189	2	2	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0019	3189	2	0	0	2	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0020	3189	1	0	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0021	3102	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0022	3190	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0023	3191	1	0	0	0	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0024	3191	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0025	3191	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0026	3191	1	0	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0027	3191	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0028	3190	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0029	3190	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0030	3190	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0031	3190	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0032	3190	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0033	3189	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0034	3189	1	0	0	1	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0035	3189	1	0	0	0	0	1	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0036	3190	1	0	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0037	3190	1	1	0	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTB_chr14_64741283_64884907	0/0	t0038	3190	1	0	1	0	0	0	copy fasta	SPTB	chr14	64741283	64884907
SPTLC1_chr9_92026147_92120413	1/1	t0001	1362	301	48	52	160	9	30	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	t0002	1362	35	22	5	8	0	0	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	t0003	1362	8	2	2	0	3	1	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	t0004	1362	3	3	0	0	0	0	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	t0005	1362	2	2	0	0	0	0	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	t0006	1362	1	0	1	0	0	0	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	t0007	1362	1	0	1	0	0	0	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	t0008	1362	1	1	0	0	0	0	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	t0009	1362	1	1	0	0	0	0	copy fasta	SPTLC1	chr9	92026147	92120413