JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPTLC1_chr9_92026147_92120413	0/0	t0010	1362	1	0	1	0	0	0	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	t0011	1362	1	1	0	0	0	0	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	t0012	1362	1	0	0	0	0	1	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	t0013	1362	1	1	0	0	0	0	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC1_chr9_92026147_92120413	0/0	t0014	1362	1	1	0	0	0	0	copy fasta	SPTLC1	chr9	92026147	92120413
SPTLC2_chr14_77500997_77621637	0/1	t0001	6348	104	13	30	41	8	11	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	1/0	t0002	6346	19	17	1	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0003	6348	17	7	6	0	2	2	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0004	6347	14	8	4	0	1	1	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0005	6346	14	7	2	0	1	4	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0006	6344	11	1	7	0	0	3	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0007	6351	7	7	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0008	6344	5	0	0	4	1	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0009	6349	3	0	0	3	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0010	6347	2	2	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0011	6344	2	0	2	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0012	6348	2	0	0	0	0	2	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0013	6348	2	1	1	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0014	6348	2	0	2	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0015	6348	2	0	0	2	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0016	6348	2	0	1	0	1	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0017	6351	2	2	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0018	6346	2	2	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0019	6348	2	2	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0020	6346	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0021	6346	1	0	1	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0022	6346	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0023	6349	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0024	6346	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0025	6348	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0026	6349	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0027	6348	1	0	0	0	1	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0028	6346	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0029	6347	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0030	6346	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0031	6348	1	0	0	1	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0032	6348	1	0	1	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0033	6346	1	0	1	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0034	6348	1	0	0	1	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0035	6348	1	0	0	1	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0036	6348	1	0	0	0	0	1	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0037	6347	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0038	6346	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0039	6346	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0040	6346	1	0	0	0	1	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0041	6346	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0042	6346	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0043	6348	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0044	6348	1	0	0	0	0	1	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0045	6348	1	0	0	1	0	0	copy fasta	SPTLC2	chr14	77500997	77621637