JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPTLC2_chr14_77500997_77621637	0/0	t0046	6347	1	0	1	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0047	6348	1	0	0	0	0	1	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0048	6348	1	0	0	0	0	1	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0049	6348	1	0	0	0	0	1	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0050	6346	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC2_chr14_77500997_77621637	0/0	t0051	6346	1	1	0	0	0	0	copy fasta	SPTLC2	chr14	77500997	77621637
SPTLC3_chr20_13003972_13174103	0/0	t0001	4533	44	11	5	26	1	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0002	4535	25	0	0	23	0	2	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0003	4535	23	3	4	14	0	2	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0004	4533	21	13	0	7	0	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0005	4535	20	3	3	14	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0006	4535	16	2	5	8	0	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0007	4535	15	7	3	4	1	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0008	4533	11	0	1	8	0	2	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0009	4529	9	1	5	0	2	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0010	4535	9	4	2	1	1	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0011	4520	7	6	1	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0012	4520	6	5	1	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/1	t0013	4529	5	0	3	0	0	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0014	4533	5	0	1	0	2	2	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0015	4531	5	4	1	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0016	4538	4	1	2	0	1	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0017	4537	3	0	1	1	0	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0018	4535	3	0	1	0	2	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0019	4532	3	1	1	1	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	1/0	t0020	4533	3	0	1	0	0	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0021	4533	2	1	0	0	1	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0022	4535	2	0	2	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0023	4531	2	2	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0024	4533	2	0	0	2	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0025	4529	2	0	0	0	1	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0026	4529	2	2	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0027	4537	2	2	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0028	4537	2	0	1	1	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0029	4533	2	0	0	0	0	2	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0030	4529	2	2	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0031	4535	1	0	0	1	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0032	4533	1	0	0	0	0	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0033	4486	1	0	0	1	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0034	4534	1	0	0	1	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0035	4538	1	0	1	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0036	4529	1	0	0	1	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0037	4537	1	1	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0038	4533	1	0	0	1	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0039	4490	1	0	1	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0040	4535	1	0	0	0	0	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0041	4537	1	0	1	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0042	4486	1	0	0	1	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0043	4535	1	0	0	1	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0044	4535	1	0	0	0	1	0	copy fasta	SPTLC3	chr20	13003972	13174103