JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPTLC3_chr20_13003972_13174103	0/0	t0045	4484	1	1	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0046	4533	1	0	1	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0047	4529	1	1	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0048	4533	1	1	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0049	4531	1	0	0	1	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0050	4533	1	0	0	0	0	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0051	4528	1	0	0	0	1	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0052	4529	1	0	0	1	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0053	4533	1	0	1	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0054	4535	1	1	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0055	4537	1	0	0	0	0	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0056	4486	1	0	0	1	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0057	4488	1	0	0	1	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0058	4520	1	1	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0059	4520	1	1	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0060	4535	1	1	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0061	4535	1	0	1	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0062	4486	1	0	0	1	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0063	4533	1	1	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0064	4529	1	0	0	0	0	1	copy fasta	SPTLC3	chr20	13003972	13174103
SPTLC3_chr20_13003972_13174103	0/0	t0065	4528	1	1	0	0	0	0	copy fasta	SPTLC3	chr20	13003972	13174103
SPTSSA_chr14_34427788_34467240	1/0	t0001	2447	216	47	51	83	5	29	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0002	2447	56	0	3	51	1	1	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0003	2447	16	8	4	0	2	2	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/1	t0004	2447	6	0	2	0	0	3	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0005	2445	6	6	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0006	2447	5	5	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0007	2447	4	4	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0008	2448	4	0	0	0	0	4	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0009	2445	4	4	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0010	2448	3	0	0	3	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0011	2447	2	0	0	2	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0012	2447	2	0	0	2	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0013	2447	2	2	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0014	2447	2	2	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0015	2445	2	2	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0016	2446	2	2	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0017	2447	1	0	1	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0018	2447	1	0	0	1	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0019	2447	1	1	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0020	2447	1	1	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0021	2447	1	1	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0022	2447	1	0	0	0	0	1	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0023	2447	1	1	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0024	2448	1	1	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0025	2445	1	1	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0026	2446	1	1	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0027	2447	1	1	0	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSA_chr14_34427788_34467240	0/0	t0028	2447	1	0	1	0	0	0	copy fasta	SPTSSA	chr14	34427788	34467240
SPTSSB_chr3_161339798_161376517	0/0	t0001	1504	192	43	34	90	5	20	copy fasta	SPTSSB	chr3	161339798	161376517