JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPTSSB_chr3_161339798_161376517	0/0	t0002	1504	127	12	17	85	2	11	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	1/1	t0003	1504	41	3	17	2	5	12	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0004	1504	12	9	1	0	0	2	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0005	1504	7	7	0	0	0	0	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0006	1504	7	4	2	0	1	0	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0007	1504	5	5	0	0	0	0	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0008	1504	3	3	0	0	0	0	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0009	1504	2	2	0	0	0	0	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0010	1504	2	0	0	1	0	1	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0011	1504	2	2	0	0	0	0	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0012	1504	2	1	1	0	0	0	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0013	1504	1	0	0	1	0	0	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0014	1504	1	1	0	0	0	0	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0015	1504	1	0	1	0	0	0	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0016	1504	1	1	0	0	0	0	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0017	1504	1	0	0	1	0	0	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0018	1504	1	0	1	0	0	0	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0019	1504	1	0	0	0	1	0	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0020	1504	1	1	0	0	0	0	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0021	1504	1	0	0	1	0	0	copy fasta	SPTSSB	chr3	161339798	161376517
SPTSSB_chr3_161339798_161376517	0/0	t0022	1504	1	0	0	1	0	0	copy fasta	SPTSSB	chr3	161339798	161376517
SPTY2D1_chr11_18601403_18639342	1/0	t0001	3544	232	39	40	116	11	25	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/1	t0002	3544	106	3	23	60	5	14	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0003	3542	30	26	3	1	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0004	3544	22	0	5	14	2	1	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0005	3544	13	9	3	0	0	1	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0006	3542	9	0	0	9	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0007	3544	7	7	0	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0008	3544	2	0	0	0	0	2	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0009	3544	1	1	0	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0010	3544	1	0	0	1	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0011	3544	1	1	0	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0012	3544	1	0	1	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0013	3479	1	0	1	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0014	3544	1	0	0	0	0	1	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0015	3544	1	1	0	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0016	3544	1	0	0	1	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0017	3544	1	0	1	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0018	3544	1	0	0	1	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0019	3544	1	0	0	1	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0020	3544	1	0	0	1	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0021	3544	1	1	0	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0022	3544	1	0	1	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0023	3542	1	1	0	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0024	3542	1	1	0	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0025	3542	1	1	0	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0026	3542	1	0	0	1	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0027	3542	1	1	0	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0028	3544	1	0	0	1	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0029	3544	1	0	0	1	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342