Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
BLID_chr11_122110340_122121215	0/0	t0003	550	1	0	0	1	0	0	copy fasta	BLID	chr11	122110340	122121215
BLID_chr11_122110340_122121215	0/0	t0004	550	1	1	0	0	0	0	copy fasta	BLID	chr11	122110340	122121215
BLK_chr8_11489387_11569599	0/0	t0001	697	85	7	15	49	1	13	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	t0002	697	47	7	4	30	2	4	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/1	t0003	697	40	3	21	0	5	10	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	t0004	697	27	21	0	0	1	5	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	t0005	697	26	19	5	0	1	1	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	t0006	697	22	6	3	6	1	6	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	1/0	t0007	697	15	6	2	4	0	2	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	t0008	697	13	3	7	1	0	2	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	t0009	697	8	8	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	t0010	697	8	8	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	t0011	697	5	2	2	1	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	t0012	697	4	0	0	0	1	3	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	t0013	697	2	2	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	t0014	697	2	0	0	2	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	t0015	697	1	1	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	t0016	697	1	0	1	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	t0017	697	1	1	0	0	0	0	copy fasta	BLK	chr8	11489387	11569599
BLK_chr8_11489387_11569599	0/0	t0018	697	1	0	0	1	0	0	copy fasta	BLK	chr8	11489387	11569599
BLMH_chr17_30243203_30296944	0/1	t0001	938	169	71	36	38	9	14	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	1/0	t0002	940	116	11	31	52	3	18	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	t0003	940	10	6	4	0	0	0	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	t0004	938	1	1	0	0	0	0	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	t0005	938	1	1	0	0	0	0	copy fasta	BLMH	chr17	30243203	30296944
BLMH_chr17_30243203_30296944	0/0	t0006	938	1	0	1	0	0	0	copy fasta	BLMH	chr17	30243203	30296944
BLM_chr15_90712346_90821166	0/1	t0001	986	178	57	21	82	4	13	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	1/0	t0002	987	88	26	14	25	5	17	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	t0003	987	4	1	1	0	2	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	t0004	987	2	2	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	t0005	987	2	1	1	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	t0006	986	1	1	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	t0007	986	1	0	0	1	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	t0008	987	1	1	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	t0009	986	1	0	0	0	1	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	t0010	986	1	0	1	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLM_chr15_90712346_90821166	0/0	t0011	986	1	1	0	0	0	0	copy fasta	BLM	chr15	90712346	90821166
BLNK_chr10_96184171_96276569	1/0	t0001	2974	123	24	24	53	4	17	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0002	2983	36	9	0	24	0	3	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0003	2979	28	2	16	1	2	7	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0004	2979	13	1	11	0	0	1	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0005	2976	12	0	0	12	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0006	2974	9	0	0	8	0	1	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0007	2973	9	5	1	2	0	1	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0008	2980	8	7	1	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0009	2979	7	7	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0010	2975	7	0	0	7	0	0	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0011	2971	6	1	2	0	1	2	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/1	t0012	2980	5	1	1	0	1	1	copy fasta	BLNK	chr10	96184171	96276569
BLNK_chr10_96184171_96276569	0/0	t0013	2979	5	5	0	0	0	0	copy fasta	BLNK	chr10	96184171	96276569