JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SPTY2D1_chr11_18601403_18639342	0/0	t0030	3544	1	1	0	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPTY2D1_chr11_18601403_18639342	0/0	t0031	3544	1	1	0	0	0	0	copy fasta	SPTY2D1	chr11	18601403	18639342
SPX_chr12_21521296_21537947	0/1	t0001	1932	240	17	45	143	9	25	copy fasta	SPX	chr12	21521296	21537947
SPX_chr12_21521296_21537947	0/0	t0002	1933	63	29	19	4	3	8	copy fasta	SPX	chr12	21521296	21537947
SPX_chr12_21521296_21537947	0/0	t0003	1932	48	28	7	7	3	3	copy fasta	SPX	chr12	21521296	21537947
SPX_chr12_21521296_21537947	0/0	t0004	1934	40	1	1	34	0	4	copy fasta	SPX	chr12	21521296	21537947
SPX_chr12_21521296_21537947	0/0	t0005	1932	13	13	0	0	0	0	copy fasta	SPX	chr12	21521296	21537947
SPX_chr12_21521296_21537947	0/0	t0006	1931	5	4	0	0	1	0	copy fasta	SPX	chr12	21521296	21537947
SPX_chr12_21521296_21537947	0/0	t0007	1933	5	0	2	3	0	0	copy fasta	SPX	chr12	21521296	21537947
SPX_chr12_21521296_21537947	0/0	t0008	1932	3	0	2	0	0	1	copy fasta	SPX	chr12	21521296	21537947
SPX_chr12_21521296_21537947	0/0	t0009	1932	3	0	0	3	0	0	copy fasta	SPX	chr12	21521296	21537947
SPX_chr12_21521296_21537947	0/0	t0010	1931	2	0	0	2	0	0	copy fasta	SPX	chr12	21521296	21537947
SPX_chr12_21521296_21537947	0/0	t0011	1932	1	0	0	1	0	0	copy fasta	SPX	chr12	21521296	21537947
SPX_chr12_21521296_21537947	1/0	t0012	1930	1	0	0	0	0	0	copy fasta	SPX	chr12	21521296	21537947
SPX_chr12_21521296_21537947	0/0	t0013	1932	1	0	0	0	0	1	copy fasta	SPX	chr12	21521296	21537947
SPX_chr12_21521296_21537947	0/0	t0014	1932	1	0	0	1	0	0	copy fasta	SPX	chr12	21521296	21537947
SPX_chr12_21521296_21537947	0/0	t0015	1933	1	1	0	0	0	0	copy fasta	SPX	chr12	21521296	21537947
SPX_chr12_21521296_21537947	0/0	t0016	1933	1	1	0	0	0	0	copy fasta	SPX	chr12	21521296	21537947
SPZ1_chr5_80315002_80326842	1/0	t0001	549	137	59	43	14	6	14	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/1	t0002	549	137	11	21	90	1	13	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	t0003	549	107	3	10	81	5	8	copy fasta	SPZ1	chr5	80315002	80326842
SPZ1_chr5_80315002_80326842	0/0	t0004	549	53	17	10	17	4	5	copy fasta	SPZ1	chr5	80315002	80326842
SQLE_chr8_124993505_125027283	1/0	t0001	1238	256	44	48	125	11	27	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/1	t0002	1238	33	3	6	19	0	4	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0003	1238	25	1	0	17	1	6	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0004	1238	14	8	4	0	2	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0005	1238	13	11	2	0	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0006	1238	13	11	2	0	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0007	1238	6	5	1	0	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0008	1238	4	4	0	0	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0009	1238	2	2	0	0	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0010	1238	2	2	0	0	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0011	1238	1	0	0	1	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0012	1238	1	0	0	0	0	1	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0013	1238	1	0	0	1	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0014	1238	1	0	0	1	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0015	1238	1	0	0	1	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0016	1238	1	0	1	0	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0017	1238	1	1	0	0	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0018	1238	1	1	0	0	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0019	1238	1	1	0	0	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQLE_chr8_124993505_125027283	0/0	t0020	1238	1	0	0	1	0	0	copy fasta	SQLE	chr8	124993505	125027283
SQOR_chr15_45630029_45696281	1/1	t0001	349	319	64	56	151	9	37	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	t0002	349	5	3	2	0	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	t0003	349	5	5	0	0	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	t0004	349	4	4	0	0	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	t0005	349	4	0	2	0	1	1	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	t0006	349	1	0	0	1	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	t0007	349	1	1	0	0	0	0	copy fasta	SQOR	chr15	45630029	45696281
SQOR_chr15_45630029_45696281	0/0	t0008	349	1	1	0	0	0	0	copy fasta	SQOR	chr15	45630029	45696281