JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SQSTM1_chr5_179815905_179843078	0/1	t0001	1518	295	55	52	147	6	34	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	1/0	t0002	1518	108	5	28	50	10	14	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	t0003	1520	15	5	5	2	2	1	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	t0004	1518	7	7	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	t0005	1518	7	6	1	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	t0006	1518	6	6	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	t0007	1518	5	5	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	t0008	1518	5	0	0	5	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	t0009	1518	3	3	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	t0010	1503	3	3	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	t0011	1520	2	0	2	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	t0012	1518	1	0	0	1	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	t0013	1584	1	0	0	0	0	1	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	t0014	1518	1	1	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	t0015	1518	1	0	0	1	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	t0016	1518	1	1	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SQSTM1_chr5_179815905_179843078	0/0	t0017	1518	1	1	0	0	0	0	copy fasta	SQSTM1	chr5	179815905	179843078
SRA1_chr5_140545068_140562473	1/1	t0001	654	384	78	68	182	18	36	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/0	t0002	654	11	10	1	0	0	0	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/0	t0003	654	5	4	1	0	0	0	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/0	t0004	654	1	1	0	0	0	0	copy fasta	SRA1	chr5	140545068	140562473
SRA1_chr5_140545068_140562473	0/0	t0005	654	1	1	0	0	0	0	copy fasta	SRA1	chr5	140545068	140562473
SRARP_chr1_15999236_16013807	0/0	t0001	2530	149	29	23	79	4	14	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0002	2529	113	32	17	51	4	9	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/1	t0003	2525	39	0	21	4	5	8	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	1/0	t0004	2530	27	12	5	0	3	6	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0005	2531	15	3	1	10	0	1	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0006	2530	13	0	0	13	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0007	2530	4	0	0	4	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0008	2530	3	1	2	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0009	2529	3	3	0	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0010	2530	3	3	0	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0011	2529	2	2	0	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0012	2529	2	2	0	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0013	2529	2	2	0	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0014	2530	2	0	0	0	1	1	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0015	2525	1	0	1	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0016	2530	1	0	0	0	0	1	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0017	2530	1	0	0	0	1	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0018	2531	1	0	0	1	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0019	2531	1	0	0	1	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0020	2530	1	0	0	1	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0021	2530	1	0	0	1	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0022	2530	1	0	0	1	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0023	2530	1	1	0	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0024	2530	1	0	0	1	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0025	2530	1	0	1	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0026	2530	1	0	0	0	0	1	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0027	2530	1	0	0	1	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0028	2529	1	0	0	1	0	0	copy fasta	SRARP	chr1	15999236	16013807