JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
SRARP_chr1_15999236_16013807	0/0	t0029	2529	1	0	1	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0030	2529	1	1	0	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0031	2529	1	0	0	0	0	1	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0032	2531	1	1	0	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0033	2530	1	1	0	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0034	2530	1	1	0	0	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0035	2530	1	0	0	1	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0036	2529	1	0	0	1	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRARP_chr1_15999236_16013807	0/0	t0037	2529	1	0	0	1	0	0	copy fasta	SRARP	chr1	15999236	16013807
SRBD1_chr2_45383680_45616267	1/1	t0001	680	339	83	60	140	14	40	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	t0002	680	11	7	4	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	t0003	680	5	5	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	t0004	680	1	0	0	1	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	t0005	680	1	1	0	0	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRBD1_chr2_45383680_45616267	0/0	t0006	680	1	0	0	1	0	0	copy fasta	SRBD1	chr2	45383680	45616267
SRCAP_chr16_30694171_30746409	0/0	t0001	2031	100	38	18	28	6	10	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/1	t0002	2032	81	10	33	25	6	6	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	1/0	t0003	2032	10	8	1	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	t0004	2030	5	3	1	0	1	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	t0005	2031	5	5	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	t0006	2032	3	3	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	t0007	2032	1	0	1	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	t0008	2032	1	1	0	0	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	t0009	2032	1	0	0	1	0	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCAP_chr16_30694171_30746409	0/0	t0010	2032	1	0	0	0	1	0	copy fasta	SRCAP	chr16	30694171	30746409
SRCIN1_chr17_38525031_38610952	0/0	t0001	3514	124	14	33	59	3	15	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0002	3517	17	1	1	10	0	5	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0003	3518	12	1	5	6	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0004	3516	11	11	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0005	3515	8	8	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/1	t0006	3512	8	1	0	5	0	1	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0007	3516	7	7	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0008	3516	7	7	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0009	3513	6	0	2	2	0	2	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0010	3514	5	5	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0011	3515	4	4	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0012	3516	4	0	0	3	0	1	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0013	3515	3	1	0	1	0	1	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0014	3516	2	2	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0015	3516	2	1	1	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0016	3517	2	1	0	1	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0017	3518	2	0	1	0	0	1	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0018	3518	2	2	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0019	3515	2	2	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0020	3516	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0021	3516	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0022	3514	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0023	3516	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0024	3514	1	0	0	0	0	1	copy fasta	SRCIN1	chr17	38525031	38610952
SRCIN1_chr17_38525031_38610952	0/0	t0025	3514	1	1	0	0	0	0	copy fasta	SRCIN1	chr17	38525031	38610952